Analysis of interatomic Contacts of Structural Units in PDB entry:
6VR6

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6VR6 entry

There are 3 chains in PDB entry 6VR6 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 3	PHE 494
B	THR 3	PHE 494
C	THR 3	LEU 367

There are154 helices in PDB entry 6VR6. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	47	66	Right-handed alpha
Helix 2	AA2	A	69	87	Right-handed alpha
Helix 3	AA3	A	87	100	Right-handed alpha
Helix 4	AA4	A	102	127	Right-handed alpha
Helix 5	AA5	A	135	137	Right-handed 310
Helix 6	AA6	A	158	173	Right-handed alpha
Helix 7	AA7	A	186	200	Right-handed alpha
Helix 8	AA8	A	212	222	Right-handed alpha
Helix 9	AA9	A	233	248	Right-handed alpha
Helix 10	AB1	A	268	279	Right-handed alpha
Helix 11	AB2	A	281	286	Right-handed 310
Helix 12	AB3	A	300	313	Right-handed alpha
Helix 13	AB4	A	332	350	Right-handed alpha
Helix 14	AB5	A	364	368	Right-handed 310
Helix 15	AB6	A	385	390	Right-handed alpha
Helix 16	AB7	A	404	413	Right-handed alpha
Helix 17	AB8	A	427	438	Right-handed alpha
Helix 18	AB9	A	460	464	Right-handed 310
Helix 19	AC1	A	473	477	Right-handed alpha
Helix 20	AC2	B	47	66	Right-handed alpha
Helix 21	AC3	B	69	87	Right-handed alpha
Helix 22	AC4	B	87	100	Right-handed alpha
Helix 23	AC5	B	102	127	Right-handed alpha
Helix 24	AC6	B	135	137	Right-handed 310
Helix 25	AC7	B	158	173	Right-handed alpha
Helix 26	AC8	B	186	200	Right-handed alpha
Helix 27	AC9	B	212	222	Right-handed alpha
Helix 28	AD1	B	233	248	Right-handed alpha
Helix 29	AD2	B	268	279	Right-handed alpha
Helix 30	AD3	B	281	286	Right-handed 310
Helix 31	AD4	B	300	313	Right-handed alpha
Helix 32	AD5	B	332	350	Right-handed alpha
Helix 33	AD6	B	364	368	Right-handed 310
Helix 34	AD7	B	385	390	Right-handed alpha
Helix 35	AD8	B	404	413	Right-handed alpha
Helix 36	AD9	B	427	438	Right-handed alpha
Helix 37	AE1	B	460	464	Right-handed 310
Helix 38	AE2	B	473	477	Right-handed alpha
Helix 39	AE3	C	47	66	Right-handed alpha
Helix 40	AE4	C	69	87	Right-handed alpha
Helix 41	AE5	C	87	100	Right-handed alpha
Helix 42	AE6	C	102	127	Right-handed alpha
Helix 43	AE7	C	135	137	Right-handed 310
Helix 44	AE8	C	158	173	Right-handed alpha
Helix 45	AE9	C	187	200	Right-handed alpha
Helix 46	AF1	C	212	222	Right-handed alpha
Helix 47	AF2	C	233	245	Right-handed alpha
Helix 48	AF3	C	246	248	Right-handed 310
Helix 49	AF4	C	268	279	Right-handed alpha
Helix 50	AF5	C	281	286	Right-handed 310
Helix 51	AF6	C	300	313	Right-handed alpha
Helix 52	AF7	C	332	349	Right-handed alpha
Helix 53	AF8	C	364	368	Right-handed 310
Helix 54	AF9	C	385	390	Right-handed alpha
Helix 55	AG1	C	404	413	Right-handed alpha
Helix 56	AG2	C	427	438	Right-handed alpha
Helix 57	AG3	C	460	464	Right-handed 310
Helix 58	AG4	C	473	477	Right-handed alpha
Helix 59	AG5	D	47	66	Right-handed alpha
Helix 60	AG6	D	69	87	Right-handed alpha
Helix 61	AG7	D	87	100	Right-handed alpha
Helix 62	AG8	D	102	126	Right-handed alpha
Helix 63	AG9	D	135	137	Right-handed 310
Helix 64	AH1	D	158	173	Right-handed alpha
Helix 65	AH2	D	187	200	Right-handed alpha
Helix 66	AH3	D	212	222	Right-handed alpha
Helix 67	AH4	D	233	246	Right-handed alpha
Helix 68	AH5	D	268	279	Right-handed alpha
Helix 69	AH6	D	281	286	Right-handed 310
Helix 70	AH7	D	300	313	Right-handed alpha
Helix 71	AH8	D	332	350	Right-handed alpha
Helix 72	AH9	D	364	368	Right-handed 310
Helix 73	AI1	D	385	390	Right-handed alpha
Helix 74	AI2	D	404	413	Right-handed alpha
Helix 75	AI3	D	427	438	Right-handed alpha
Helix 76	AI4	D	460	464	Right-handed 310
Helix 77	AI5	D	473	477	Right-handed alpha
Helix 78	AI6	E	47	67	Right-handed alpha
Helix 79	AI7	E	69	87	Right-handed alpha
Helix 80	AI8	E	87	100	Right-handed alpha
Helix 81	AI9	E	102	126	Right-handed alpha
Helix 82	AJ1	E	135	137	Right-handed 310
Helix 83	AJ2	E	158	173	Right-handed alpha
Helix 84	AJ3	E	187	200	Right-handed alpha
Helix 85	AJ4	E	212	222	Right-handed alpha
Helix 86	AJ5	E	233	248	Right-handed alpha
Helix 87	AJ6	E	268	279	Right-handed alpha
Helix 88	AJ7	E	281	286	Right-handed 310
Helix 89	AJ8	E	300	313	Right-handed alpha
Helix 90	AJ9	E	332	349	Right-handed alpha
Helix 91	AK1	E	364	368	Right-handed 310
Helix 92	AK2	E	385	390	Right-handed alpha
Helix 93	AK3	E	404	413	Right-handed alpha
Helix 94	AK4	E	427	438	Right-handed alpha
Helix 95	AK5	E	460	462	Right-handed 310
Helix 96	AK6	E	473	477	Right-handed alpha
Helix 97	AK7	F	47	67	Right-handed alpha
Helix 98	AK8	F	69	87	Right-handed alpha
Helix 99	AK9	F	87	100	Right-handed alpha
Helix 100	AL1	F	102	126	Right-handed alpha
Helix 101	AL2	F	135	137	Right-handed 310
Helix 102	AL3	F	158	173	Right-handed alpha
Helix 103	AL4	F	186	200	Right-handed alpha
Helix 104	AL5	F	212	222	Right-handed alpha
Helix 105	AL6	F	233	246	Right-handed alpha
Helix 106	AL7	F	268	279	Right-handed alpha
Helix 107	AL8	F	281	286	Right-handed 310
Helix 108	AL9	F	300	313	Right-handed alpha
Helix 109	AM1	F	332	349	Right-handed alpha
Helix 110	AM2	F	364	368	Right-handed 310
Helix 111	AM3	F	385	390	Right-handed alpha
Helix 112	AM4	F	404	413	Right-handed alpha
Helix 113	AM5	F	427	438	Right-handed alpha
Helix 114	AM6	F	460	464	Right-handed 310
Helix 115	AM7	F	473	477	Right-handed alpha
Helix 116	AM8	G	47	66	Right-handed alpha
Helix 117	AM9	G	69	87	Right-handed alpha
Helix 118	AN1	G	87	100	Right-handed alpha
Helix 119	AN2	G	102	127	Right-handed alpha
Helix 120	AN3	G	135	137	Right-handed 310
Helix 121	AN4	G	158	173	Right-handed alpha
Helix 122	AN5	G	187	200	Right-handed alpha
Helix 123	AN6	G	212	222	Right-handed alpha
Helix 124	AN7	G	233	245	Right-handed alpha
Helix 125	AN8	G	246	248	Right-handed 310
Helix 126	AN9	G	268	279	Right-handed alpha
Helix 127	AO1	G	281	286	Right-handed 310
Helix 128	AO2	G	300	313	Right-handed alpha
Helix 129	AO3	G	332	350	Right-handed alpha
Helix 130	AO4	G	364	368	Right-handed 310
Helix 131	AO5	G	385	390	Right-handed alpha
Helix 132	AO6	G	404	413	Right-handed alpha
Helix 133	AO7	G	427	438	Right-handed alpha
Helix 134	AO8	G	460	464	Right-handed 310
Helix 135	AO9	G	473	477	Right-handed alpha
Helix 136	AP1	H	47	66	Right-handed alpha
Helix 137	AP2	H	69	87	Right-handed alpha
Helix 138	AP3	H	87	100	Right-handed alpha
Helix 139	AP4	H	102	127	Right-handed alpha
Helix 140	AP5	H	135	137	Right-handed 310
Helix 141	AP6	H	158	173	Right-handed alpha
Helix 142	AP7	H	187	200	Right-handed alpha
Helix 143	AP8	H	212	222	Right-handed alpha
Helix 144	AP9	H	233	248	Right-handed alpha
Helix 145	AQ1	H	268	279	Right-handed alpha
Helix 146	AQ2	H	281	286	Right-handed 310
Helix 147	AQ3	H	300	313	Right-handed alpha
Helix 148	AQ4	H	332	349	Right-handed alpha
Helix 149	AQ5	H	364	368	Right-handed 310
Helix 150	AQ6	H	385	390	Right-handed alpha
Helix 151	AQ7	H	404	413	Right-handed alpha
Helix 152	AQ8	H	427	438	Right-handed alpha
Helix 153	AQ9	H	460	462	Right-handed 310
Helix 154	AR1	H	473	477	Right-handed alpha

There are 29 sheets in PDB entry 6VR6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	13	14	first strand
Strand 2	A	19	20	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	25	32	first strand
Strand 2	A	39	46	anti-parallel

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There are 20 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	352	355	first strand
Strand 2	B	376	379	anti-parallel
Strand 3	B	396	402	parallel
Strand 4	B	293	297	parallel
Strand 5	B	260	263	parallel
Strand 6	B	420	424	parallel
Strand 7	B	442	445	parallel
Strand 8	A	478	485	parallel
Strand 9	A	139	146	anti-parallel
Strand 10	A	129	133	anti-parallel
Strand 11	C	129	133	anti-parallel
Strand 12	C	139	146	anti-parallel
Strand 13	C	478	485	anti-parallel
Strand 14	D	442	445	parallel
Strand 15	D	420	424	parallel
Strand 16	D	260	263	parallel
Strand 17	D	293	297	parallel
Strand 18	D	396	402	parallel
Strand 19	D	376	379	parallel
Strand 20	D	352	355	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	206	208	first strand
Strand 2	A	176	180	parallel
Strand 3	A	149	153	parallel
Strand 4	A	225	231	parallel
Strand 5	A	251	254	parallel

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There are 20 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	352	355	first strand
Strand 2	A	376	379	anti-parallel
Strand 3	A	396	402	parallel
Strand 4	A	293	297	parallel
Strand 5	A	260	263	parallel
Strand 6	A	420	424	parallel
Strand 7	A	442	445	parallel
Strand 8	B	478	485	parallel
Strand 9	B	139	146	anti-parallel
Strand 10	B	129	133	anti-parallel
Strand 11	D	129	133	anti-parallel
Strand 12	D	139	146	anti-parallel
Strand 13	D	478	485	anti-parallel
Strand 14	C	442	445	parallel
Strand 15	C	420	424	parallel
Strand 16	C	260	263	parallel
Strand 17	C	293	297	parallel
Strand 18	C	396	402	parallel
Strand 19	C	376	379	parallel
Strand 20	C	352	355	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	457	458	first strand
Strand 2	A	467	468	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	13	15	first strand
Strand 2	B	18	20	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	25	32	first strand
Strand 2	B	39	46	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	206	208	first strand
Strand 2	B	176	180	parallel
Strand 3	B	149	153	parallel
Strand 4	B	225	231	parallel
Strand 5	B	251	254	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	13	15	first strand
Strand 2	C	18	20	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	25	32	first strand
Strand 2	C	39	46	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	206	208	first strand
Strand 2	C	176	180	parallel
Strand 3	C	149	153	parallel
Strand 4	C	225	231	parallel
Strand 5	C	251	254	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	13	15	first strand
Strand 2	D	18	20	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	25	32	first strand
Strand 2	D	39	46	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	206	208	first strand
Strand 2	D	176	180	parallel
Strand 3	D	149	153	parallel
Strand 4	D	225	231	parallel
Strand 5	D	251	254	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	13	15	first strand
Strand 2	E	18	20	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	25	32	first strand
Strand 2	E	39	46	anti-parallel

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There are 20 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	352	355	first strand
Strand 2	F	376	379	anti-parallel
Strand 3	F	396	402	parallel
Strand 4	F	293	297	parallel
Strand 5	F	260	263	parallel
Strand 6	F	420	424	parallel
Strand 7	F	442	445	parallel
Strand 8	E	478	485	parallel
Strand 9	E	139	146	anti-parallel
Strand 10	E	129	133	anti-parallel
Strand 11	H	129	133	anti-parallel
Strand 12	H	139	146	anti-parallel
Strand 13	H	478	485	anti-parallel
Strand 14	G	442	445	parallel
Strand 15	G	420	424	parallel
Strand 16	G	260	263	parallel
Strand 17	G	293	297	parallel
Strand 18	G	396	402	parallel
Strand 19	G	376	379	parallel
Strand 20	G	352	355	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	206	208	first strand
Strand 2	E	176	180	parallel
Strand 3	E	149	153	parallel
Strand 4	E	225	231	parallel
Strand 5	E	251	254	parallel
Strand 6	E	464	465	anti-parallel

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There are 20 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	352	355	first strand
Strand 2	E	376	379	anti-parallel
Strand 3	E	396	402	parallel
Strand 4	E	293	297	parallel
Strand 5	E	260	263	parallel
Strand 6	E	420	424	parallel
Strand 7	E	442	445	parallel
Strand 8	F	478	485	parallel
Strand 9	F	139	146	anti-parallel
Strand 10	F	129	133	anti-parallel
Strand 11	G	129	133	anti-parallel
Strand 12	G	139	146	anti-parallel
Strand 13	G	478	485	anti-parallel
Strand 14	H	442	445	parallel
Strand 15	H	420	424	parallel
Strand 16	H	260	263	parallel
Strand 17	H	293	297	parallel
Strand 18	H	396	402	parallel
Strand 19	H	376	379	parallel
Strand 20	H	352	355	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	13	15	first strand
Strand 2	F	18	20	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	25	32	first strand
Strand 2	F	39	46	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	206	208	first strand
Strand 2	F	176	180	parallel
Strand 3	F	149	153	parallel
Strand 4	F	225	231	parallel
Strand 5	F	251	254	parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	13	15	first strand
Strand 2	G	18	20	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	25	32	first strand
Strand 2	G	39	46	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	206	208	first strand
Strand 2	G	176	180	parallel
Strand 3	G	149	153	parallel
Strand 4	G	225	231	parallel
Strand 5	G	251	254	parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	13	14	first strand
Strand 2	H	19	20	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	25	32	first strand
Strand 2	H	39	46	anti-parallel

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There are 6 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	206	208	first strand
Strand 2	H	176	180	parallel
Strand 3	H	149	153	parallel
Strand 4	H	225	231	parallel
Strand 5	H	251	254	parallel
Strand 6	H	464	465	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6VR6

Analysis of interatomic Contacts of Structural Units in PDB entry:
6VR6