Analysis of interatomic Contacts of Structural Units in PDB entry:
6VR7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6VR7 entry

There is 1 chain in PDB entry 6VR7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 5LYS 492
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 6VR7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 27Right-handed alpha
Helix 2
AA2
A
43 50Right-handed alpha
Helix 3
AA3
A
60 67Right-handed alpha
Helix 4
AA4
A
74 77Right-handed 310
Helix 5
AA5
A
79 87Right-handed alpha
Helix 6
AA6
A
97 103Right-handed alpha
Helix 7
AA7
A
117 132Right-handed alpha
Helix 8
AA8
A
149 155Right-handed alpha
Helix 9
AA9
A
173 183Right-handed alpha
Helix 10
AB1
A
201 211Right-handed alpha
Helix 11
AB2
A
212 215Right-handed 310
Helix 12
AB3
A
225 230Right-handed alpha
Helix 13
AB4
A
317 334Right-handed alpha
Helix 14
AB5
A
337 347Right-handed alpha
Helix 15
AB6
A
371 382Right-handed alpha
Helix 16
AB7
A
399 410Right-handed alpha
Helix 17
AB8
A
411 413Right-handed 310
Helix 18
AB9
A
420 428Right-handed alpha
Helix 19
AC1
A
437 441Right-handed 310
Helix 20
AC2
A
452 467Right-handed alpha
Helix 21
AC3
A
477 492Right-handed alpha
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There are 4 sheets in PDB entry 6VR7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 55first strand
Strand 2
A
31 35parallel
Strand 3
A
7 11parallel
Strand 4
A
69 72parallel
Strand 5
A
93 96parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
162 165first strand
Strand 2
A
109 113parallel
Strand 3
A
186 189parallel
Strand 4
A
218 222parallel
Strand 5
A
236 241parallel
Strand 6
A
290 296parallel
Strand 7
A
299 304anti-parallel
Strand 8
A
307 311anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
265 271first strand
Strand 2
A
274 278anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
356 357first strand
Strand 2
A
363 367anti-parallel
Strand 3
A
472 476parallel
Strand 4
A
388 392parallel
Strand 5
A
415 418parallel
Strand 6
A
433 434parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il