Analysis of interatomic Contacts of Structural Units in PDB entry:
6VR8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6VR8 entry

There is 1 chain in PDB entry 6VR8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
I
 ALA -6CYS 475
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 6VR8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
I
3 10Right-handed alpha
Helix 2
AA2
I
44 54Right-handed alpha
Helix 3
AA3
I
67 76Right-handed alpha
Helix 4
AA4
I
84 101Right-handed alpha
Helix 5
AA5
I
114 129Right-handed alpha
Helix 6
AA6
I
149 162Right-handed alpha
Helix 7
AA7
I
184 194Right-handed alpha
Helix 8
AA8
I
213 227Right-handed alpha
Helix 9
AA9
I
239 245Right-handed alpha
Helix 10
AB1
I
246 249Right-handed 310
Helix 11
AB2
I
280 284Right-handed 310
Helix 12
AB3
I
288 305Right-handed alpha
Helix 13
AB4
I
308 318Right-handed alpha
Helix 14
AB5
I
342 356Right-handed alpha
Helix 15
AB6
I
372 388Right-handed alpha
Helix 16
AB7
I
405 409Right-handed 310
Helix 17
AB8
I
411 425Right-handed alpha
Helix 18
AB9
I
434 446Right-handed alpha
Helix 19
AC1
I
462 470Right-handed alpha
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There are 7 sheets in PDB entry 6VR8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
0 2first strand
Strand 2
I
20 22anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
13 15first strand
Strand 2
I
79 81anti-parallel
Strand 3
I
58 61parallel
Strand 4
I
37 39parallel
Strand 5
I
26 27parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
42 43first strand
Strand 2
I
63 64parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
133 135first strand
Strand 2
I
166 170parallel
Strand 3
I
105 110parallel
Strand 4
I
197 200parallel
Strand 5
I
232 236parallel
Strand 6
I
254 258parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
176 177first strand
Strand 2
I
180 181anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
264 267first strand
Strand 2
I
270 273anti-parallel
Strand 3
I
276 279anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
327 330first strand
Strand 2
I
334 338anti-parallel
Strand 3
I
451 455parallel
Strand 4
I
361 366parallel
Strand 5
I
393 398parallel
Strand 6
I
429 432parallel
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