Analysis of interatomic Contacts of Structural Units in PDB entry:
6VRB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6VRB entry

There are 3 chains in PDB entry 6VRB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 G 1 G 52
A
 THR 34LYS 1120
C
 MET 1GLU 229
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 59 helices in PDB entry 6VRB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
69 75Right-handed alpha
Helix 2
AA2
A
76 86Right-handed alpha
Helix 3
AA3
A
95 105Right-handed alpha
Helix 4
AA4
A
113 120Right-handed alpha
Helix 5
AA5
A
121 126Right-handed alpha
Helix 6
AA6
A
153 165Right-handed alpha
Helix 7
AA7
A
171 179Right-handed alpha
Helix 8
AA8
A
179 203Right-handed alpha
Helix 9
AA9
A
214 226Right-handed alpha
Helix 10
AB1
A
232 240Right-handed alpha
Helix 11
AB2
A
247 254Right-handed alpha
Helix 12
AB3
A
262 278Right-handed alpha
Helix 13
AB4
A
279 282Right-handed 310
Helix 14
AB5
A
287 303Right-handed alpha
Helix 15
AB6
A
322 342Right-handed alpha
Helix 16
AB7
A
343 348Right-handed alpha
Helix 17
AB8
A
355 388Right-handed alpha
Helix 18
AB9
A
397 406Right-handed alpha
Helix 19
AC1
A
409 421Right-handed alpha
Helix 20
AC2
A
432 450Right-handed alpha
Helix 21
AC3
A
489 495Right-handed 310
Helix 22
AC4
A
501 513Right-handed alpha
Helix 23
AC5
A
520 528Right-handed 310
Helix 24
AC6
A
547 560Right-handed alpha
Helix 25
AC7
A
583 599Right-handed alpha
Helix 26
AC8
A
599 605Right-handed alpha
Helix 27
AC9
A
607 623Right-handed alpha
Helix 28
AD1
A
643 658Right-handed alpha
Helix 29
AD2
A
660 665Right-handed alpha
Helix 30
AD3
A
669 690Right-handed alpha
Helix 31
AD4
A
723 729Right-handed alpha
Helix 32
AD5
A
732 748Right-handed alpha
Helix 33
AD6
A
758 771Right-handed alpha
Helix 34
AD7
A
779 783Right-handed 310
Helix 35
AD8
A
786 795Right-handed alpha
Helix 36
AD9
A
800 804Right-handed 310
Helix 37
AE1
A
823 828Right-handed alpha
Helix 38
AE2
A
830 839Right-handed alpha
Helix 39
AE3
A
847 853Right-handed alpha
Helix 40
AE4
A
859 876Right-handed alpha
Helix 41
AE5
A
877 881Right-handed 310
Helix 42
AE6
A
882 907Right-handed alpha
Helix 43
AE7
A
909 946Right-handed alpha
Helix 44
AE8
A
994 1003Right-handed alpha
Helix 45
AE9
A
1009 1021Right-handed alpha
Helix 46
AF1
A
1033 1044Right-handed alpha
Helix 47
AF2
A
1047 1053Right-handed alpha
Helix 48
AF3
A
1053 1065Right-handed alpha
Helix 49
AF4
A
1106 1118Right-handed alpha
Helix 50
AF5
C
20 34Right-handed alpha
Helix 51
AF6
C
43 54Right-handed alpha
Helix 52
AF7
C
88 95Right-handed alpha
Helix 53
AF8
C
109 114Right-handed alpha
Helix 54
AF9
C
114 122Right-handed alpha
Helix 55
AG1
C
155 161Right-handed alpha
Helix 56
AG2
C
162 176Right-handed alpha
Helix 57
AG3
C
177 200Right-handed alpha
Helix 58
AG4
C
201 205Right-handed 310
Helix 59
AG5
C
206 229Right-handed alpha
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There are 6 sheets in PDB entry 6VRB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 49first strand
Strand 2
A
58 59anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
134 136first strand
Strand 2
A
150 152anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
464 465first strand
Strand 2
A
484 485anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
8 10first strand
Strand 2
C
13 15anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
59 62first strand
Strand 2
C
73 78anti-parallel
Strand 3
C
83 87anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
124 126first strand
Strand 2
C
140 142anti-parallel
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