Analysis of interatomic Contacts of Structural Units in PDB entry:
6VRC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6VRC entry

There are 2 chains in PDB entry 6VRC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 34LYS 1120
B
 G 1 U 51
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 48 helices in PDB entry 6VRC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
67 75Right-handed alpha
Helix 2
AA2
A
76 85Right-handed alpha
Helix 3
AA3
A
95 105Right-handed alpha
Helix 4
AA4
A
121 125Right-handed 310
Helix 5
AA5
A
153 163Right-handed alpha
Helix 6
AA6
A
171 179Right-handed alpha
Helix 7
AA7
A
179 203Right-handed alpha
Helix 8
AA8
A
214 226Right-handed alpha
Helix 9
AA9
A
232 240Right-handed alpha
Helix 10
AB1
A
247 255Right-handed alpha
Helix 11
AB2
A
264 278Right-handed alpha
Helix 12
AB3
A
278 283Right-handed alpha
Helix 13
AB4
A
287 303Right-handed alpha
Helix 14
AB5
A
322 332Right-handed alpha
Helix 15
AB6
A
332 348Right-handed alpha
Helix 16
AB7
A
355 388Right-handed alpha
Helix 17
AB8
A
409 421Right-handed alpha
Helix 18
AB9
A
433 442Right-handed alpha
Helix 19
AC1
A
489 500Right-handed alpha
Helix 20
AC2
A
501 512Right-handed alpha
Helix 21
AC3
A
520 524Right-handed 310
Helix 22
AC4
A
547 560Right-handed alpha
Helix 23
AC5
A
584 596Right-handed alpha
Helix 24
AC6
A
599 607Right-handed alpha
Helix 25
AC7
A
607 623Right-handed alpha
Helix 26
AC8
A
643 658Right-handed alpha
Helix 27
AC9
A
660 665Right-handed alpha
Helix 28
AD1
A
671 690Right-handed alpha
Helix 29
AD2
A
693 697Right-handed 310
Helix 30
AD3
A
723 729Right-handed alpha
Helix 31
AD4
A
733 748Right-handed alpha
Helix 32
AD5
A
755 763Right-handed alpha
Helix 33
AD6
A
764 773Right-handed alpha
Helix 34
AD7
A
786 795Right-handed alpha
Helix 35
AD8
A
819 828Right-handed alpha
Helix 36
AD9
A
830 838Right-handed alpha
Helix 37
AE1
A
847 854Right-handed alpha
Helix 38
AE2
A
859 876Right-handed alpha
Helix 39
AE3
A
877 881Right-handed 310
Helix 40
AE4
A
884 907Right-handed alpha
Helix 41
AE5
A
909 944Right-handed alpha
Helix 42
AE6
A
999 1003Right-handed alpha
Helix 43
AE7
A
1011 1021Right-handed alpha
Helix 44
AE8
A
1022 1026Right-handed 310
Helix 45
AE9
A
1036 1044Right-handed alpha
Helix 46
AF1
A
1047 1052Right-handed alpha
Helix 47
AF2
A
1055 1065Right-handed alpha
Helix 48
AF3
A
1106 1118Right-handed alpha
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There are 3 sheets in PDB entry 6VRC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 49first strand
Strand 2
A
58 59anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
134 136first strand
Strand 2
A
150 152anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
464 465first strand
Strand 2
A
484 485anti-parallel
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