Analysis of interatomic Contacts of Structural Units in PDB entry:
6VRK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6VRK entry

There are 3 chains in PDB entry 6VRK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 77PRO 617
C
 ASP 21ILE 126
B
 GLU 20VAL 136
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 6VRK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
84 97Right-handed alpha
Helix 2
AA2
A
99 112Right-handed alpha
Helix 3
AA3
A
113 116Right-handed 310
Helix 4
AA4
A
117 129Right-handed alpha
Helix 5
AA5
A
129 144Right-handed alpha
Helix 6
AA6
A
148 154Right-handed 310
Helix 7
AA7
A
155 158Right-handed 310
Helix 8
AA8
A
159 190Right-handed alpha
Helix 9
AA9
A
226 235Right-handed alpha
Helix 10
AB1
A
238 242Right-handed 310
Helix 11
AB2
A
252 271Right-handed alpha
Helix 12
AB3
A
273 285Right-handed alpha
Helix 13
AB4
A
286 300Right-handed alpha
Helix 14
AB5
A
304 314Right-handed alpha
Helix 15
AB6
A
318 321Right-handed 310
Helix 16
AB7
A
322 338Right-handed alpha
Helix 17
AB8
A
343 349Right-handed alpha
Helix 18
AB9
A
356 390Right-handed alpha
Helix 19
AC1
A
393 398Right-handed alpha
Helix 20
AC2
A
403 408Right-handed alpha
Helix 21
AC3
A
408 416Right-handed alpha
Helix 22
AC4
A
419 454Right-handed alpha
Helix 23
AC5
A
465 478Right-handed alpha
Helix 24
AC6
A
484 495Right-handed alpha
Helix 25
AC7
A
497 515Right-handed alpha
Helix 26
AC8
A
517 529Right-handed alpha
Helix 27
AC9
A
534 543Right-handed alpha
Helix 28
AD1
A
543 557Right-handed alpha
Helix 29
AD2
A
571 584Right-handed alpha
Helix 30
AD3
A
587 600Right-handed alpha
Helix 31
AD4
A
603 613Right-handed alpha
Helix 32
AD5
B
47 51Right-handed 310
Helix 33
AD6
B
92 96Right-handed 310
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There are 7 sheets in PDB entry 6VRK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
564 565first strand
Strand 2
A
568 569anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
24 26first strand
Strand 2
C
43 45anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
38 41first strand
Strand 2
C
90 96anti-parallel
Strand 3
C
85 87anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
73 74first strand
Strand 2
C
65 69anti-parallel
Strand 3
C
53 58anti-parallel
Strand 4
C
105 110anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
29 30first strand
Strand 2
B
134 135parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
37 38first strand
Strand 2
B
100 102anti-parallel
Strand 3
B
88 89anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
64 68first strand
Strand 2
B
52 58anti-parallel
Strand 3
B
112 118anti-parallel
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