Analysis of interatomic Contacts of Structural Units in PDB entry:
6VRW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6VRW entry

There are 6 chains in PDB entry 6VRW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
G	LEU 34	THR 504
B	VAL 513	ASN 660
A	LEU 34	THR 504
C	VAL 513	ASN 660
D	LEU 34	THR 504
E	VAL 513	ASN 660

There are 30 helices in PDB entry 6VRW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	G	101	116	Right-handed alpha
Helix 2	AA2	G	335	351	Right-handed alpha
Helix 3	AA3	G	425	429	Right-handed 310
Helix 4	AA4	G	475	480	Right-handed alpha
Helix 5	AA5	B	516	522	Right-handed alpha
Helix 6	AA6	B	529	534	Right-handed alpha
Helix 7	AA7	B	570	595	Right-handed alpha
Helix 8	AA8	B	618	625	Right-handed alpha
Helix 9	AA9	B	627	635	Right-handed alpha
Helix 10	AB1	B	638	657	Right-handed alpha
Helix 11	AB2	A	101	116	Right-handed alpha
Helix 12	AB3	A	335	351	Right-handed alpha
Helix 13	AB4	A	425	429	Right-handed 310
Helix 14	AB5	A	475	480	Right-handed alpha
Helix 15	AB6	C	516	522	Right-handed alpha
Helix 16	AB7	C	529	534	Right-handed alpha
Helix 17	AB8	C	570	595	Right-handed alpha
Helix 18	AB9	C	618	625	Right-handed alpha
Helix 19	AC1	C	627	635	Right-handed alpha
Helix 20	AC2	C	638	657	Right-handed alpha
Helix 21	AC3	D	101	116	Right-handed alpha
Helix 22	AC4	D	335	351	Right-handed alpha
Helix 23	AC5	D	425	429	Right-handed 310
Helix 24	AC6	D	475	480	Right-handed alpha
Helix 25	AC7	E	516	522	Right-handed alpha
Helix 26	AC8	E	529	534	Right-handed alpha
Helix 27	AC9	E	570	595	Right-handed alpha
Helix 28	AD1	E	618	625	Right-handed alpha
Helix 29	AD2	E	627	635	Right-handed alpha
Helix 30	AD3	E	638	657	Right-handed alpha

There are 30 sheets in PDB entry 6VRW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	494	499	first strand
Strand 2	G	35	40	anti-parallel
Strand 3	B	605	609	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	45	47	first strand
Strand 2	G	486	491	anti-parallel
Strand 3	G	223	228	anti-parallel
Strand 4	G	242	245	anti-parallel
Strand 5	G	83	85	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	75	76	first strand
Strand 2	G	53	56	parallel
Strand 3	G	216	218	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	91	93	first strand
Strand 2	G	237	239	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	130	131	first strand
Strand 2	G	154	162	anti-parallel
Strand 3	G	169	177	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	181	183	first strand
Strand 2	G	191	193	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	202	203	first strand
Strand 2	G	434	435	parallel
Strand 3	G	423	424	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	272	273	first strand
Strand 2	G	284	286	anti-parallel
Strand 3	G	452	456	anti-parallel
Strand 4	G	467	470	anti-parallel
Strand 5	G	360	361	parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	374	378	first strand
Strand 2	G	381	385	anti-parallel
Strand 3	G	414	421	anti-parallel
Strand 4	G	330	333	anti-parallel
Strand 5	G	292	298	anti-parallel
Strand 6	G	443	449	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	301	312	first strand
Strand 2	G	315	323	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	494	499	first strand
Strand 2	A	35	40	anti-parallel
Strand 3	C	605	609	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	45	47	first strand
Strand 2	A	486	491	anti-parallel
Strand 3	A	223	228	anti-parallel
Strand 4	A	242	245	anti-parallel
Strand 5	A	83	85	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	75	76	first strand
Strand 2	A	53	56	parallel
Strand 3	A	216	218	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	91	93	first strand
Strand 2	A	237	239	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	130	131	first strand
Strand 2	A	154	162	anti-parallel
Strand 3	A	169	177	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	181	183	first strand
Strand 2	A	191	193	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	202	203	first strand
Strand 2	A	434	435	parallel
Strand 3	A	423	424	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	272	273	first strand
Strand 2	A	284	286	anti-parallel
Strand 3	A	452	456	anti-parallel
Strand 4	A	467	470	anti-parallel
Strand 5	A	360	361	parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	374	378	first strand
Strand 2	A	381	385	anti-parallel
Strand 3	A	414	421	anti-parallel
Strand 4	A	330	333	anti-parallel
Strand 5	A	292	298	anti-parallel
Strand 6	A	443	449	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	301	312	first strand
Strand 2	A	315	323	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	494	499	first strand
Strand 2	D	35	40	anti-parallel
Strand 3	E	605	609	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	45	47	first strand
Strand 2	D	486	491	anti-parallel
Strand 3	D	223	228	anti-parallel
Strand 4	D	242	245	anti-parallel
Strand 5	D	83	85	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	75	76	first strand
Strand 2	D	53	56	parallel
Strand 3	D	216	218	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	91	93	first strand
Strand 2	D	237	239	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	130	131	first strand
Strand 2	D	154	162	anti-parallel
Strand 3	D	169	177	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	181	183	first strand
Strand 2	D	191	193	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	202	203	first strand
Strand 2	D	434	435	parallel
Strand 3	D	423	424	anti-parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	272	273	first strand
Strand 2	D	284	286	anti-parallel
Strand 3	D	452	456	anti-parallel
Strand 4	D	467	470	anti-parallel
Strand 5	D	360	361	parallel

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There are 6 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	374	378	first strand
Strand 2	D	381	385	anti-parallel
Strand 3	D	414	421	anti-parallel
Strand 4	D	330	333	anti-parallel
Strand 5	D	292	298	anti-parallel
Strand 6	D	443	449	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	301	312	first strand
Strand 2	D	315	323	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6VRW

Analysis of interatomic Contacts of Structural Units in PDB entry:
6VRW