Analysis of interatomic Contacts of Structural Units in PDB entry:
6VS4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6VS4 entry

There are 2 chains in PDB entry 6VS4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY -1LEU 221
B
 GLY -3GLU 219
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 6VS4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
-1 3Right-handed 310
Helix 2
AA2
A
4 30Right-handed alpha
Helix 3
AA3
A
47 56Right-handed alpha
Helix 4
AA4
A
90 101Right-handed 310
Helix 5
AA5
A
114 116Right-handed 310
Helix 6
AA6
A
117 132Right-handed alpha
Helix 7
AA7
A
143 148Right-handed 310
Helix 8
AA8
A
150 156Right-handed alpha
Helix 9
AA9
A
157 169Right-handed alpha
Helix 10
AB1
A
175 179Right-handed 310
Helix 11
AB2
A
191 196Right-handed 310
Helix 12
AB3
A
199 220Right-handed alpha
Helix 13
AB4
B
-2 32Right-handed alpha
Helix 14
AB5
B
47 56Right-handed alpha
Helix 15
AB6
B
96 101Right-handed 310
Helix 16
AB7
B
114 116Right-handed 310
Helix 17
AB8
B
117 132Right-handed alpha
Helix 18
AB9
B
143 148Right-handed 310
Helix 19
AC1
B
150 157Right-handed alpha
Helix 20
AC2
B
157 169Right-handed alpha
Helix 21
AC3
B
175 179Right-handed 310
Helix 22
AC4
B
191 196Right-handed 310
Helix 23
AC5
B
199 219Right-handed alpha
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There are 2 sheets in PDB entry 6VS4. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 64first strand
Strand 2
A
71 76anti-parallel
Strand 3
A
79 86anti-parallel
Strand 4
A
36 43parallel
Strand 5
A
105 111parallel
Strand 6
A
137 142parallel
Strand 7
A
182 186parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
63 64first strand
Strand 2
B
71 76anti-parallel
Strand 3
B
79 86anti-parallel
Strand 4
B
36 43parallel
Strand 5
B
105 111parallel
Strand 6
B
137 142parallel
Strand 7
B
182 186parallel
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