Analysis of interatomic Contacts of Structural Units in PDB entry:
6VS7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6VS7 entry

There are 2 chains in PDB entry 6VS7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 252SER 660
E
 THR 252SER 660
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 6VS7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
377 381Right-handed 310
Helix 2
AA2
A
399 414Right-handed alpha
Helix 3
AA3
A
444 447Right-handed 310
Helix 4
AA4
A
494 507Right-handed alpha
Helix 5
AA5
A
573 577Right-handed 310
Helix 6
AA6
A
596 612Right-handed alpha
Helix 7
AA7
A
647 650Right-handed 310
Helix 8
AA8
E
377 381Right-handed 310
Helix 9
AA9
E
399 414Right-handed alpha
Helix 10
AB1
E
444 447Right-handed 310
Helix 11
AB2
E
494 507Right-handed alpha
Helix 12
AB3
E
573 577Right-handed 310
Helix 13
AB4
E
596 611Right-handed alpha
Helix 14
AB5
E
647 650Right-handed 310
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There are 16 sheets in PDB entry 6VS7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
258 260first strand
Strand 2
A
272 280anti-parallel
Strand 3
A
327 334anti-parallel
Strand 4
A
309 312anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
264 268first strand
Strand 2
A
370 376parallel
Strand 3
A
346 355anti-parallel
Strand 4
A
286 292anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
390 392first strand
Strand 2
A
449 451parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
422 425first strand
Strand 2
A
431 434anti-parallel
Strand 3
A
440 443anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
457 458first strand
Strand 2
A
473 480anti-parallel
Strand 3
A
528 534anti-parallel
Strand 4
A
510 512anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
464 468first strand
Strand 2
A
565 572parallel
Strand 3
A
547 556anti-parallel
Strand 4
A
486 490anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
587 589first strand
Strand 2
A
652 654parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
620 623first strand
Strand 2
A
629 632anti-parallel
Strand 3
A
643 646anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
258 260first strand
Strand 2
E
272 280anti-parallel
Strand 3
E
327 334anti-parallel
Strand 4
E
309 311anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
264 268first strand
Strand 2
E
370 376parallel
Strand 3
E
346 355anti-parallel
Strand 4
E
286 292anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
390 392first strand
Strand 2
E
449 451parallel
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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
422 425first strand
Strand 2
E
431 434anti-parallel
Strand 3
E
440 443anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
457 458first strand
Strand 2
E
473 480anti-parallel
Strand 3
E
528 534anti-parallel
Strand 4
E
510 512anti-parallel
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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
464 468first strand
Strand 2
E
565 572parallel
Strand 3
E
547 556anti-parallel
Strand 4
E
486 490anti-parallel
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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
587 589first strand
Strand 2
E
652 654parallel
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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
620 623first strand
Strand 2
E
629 632anti-parallel
Strand 3
E
643 646anti-parallel
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