Analysis of interatomic Contacts of Structural Units in PDB entry:
6VSG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6VSG entry

There are 2 chains in PDB entry 6VSG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1SER 159
B
 MET 1SER 159
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 6VSG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
24 36Right-handed alpha
Helix 2
AA2
A
44 50Right-handed alpha
Helix 3
AA3
A
51 55Right-handed 310
Helix 4
AA4
A
81 86Right-handed alpha
Helix 5
AA5
A
96 104Right-handed alpha
Helix 6
AA6
A
105 107Right-handed 310
Helix 7
AA7
B
24 36Right-handed alpha
Helix 8
AA8
B
44 50Right-handed alpha
Helix 9
AA9
B
81 86Right-handed 310
Helix 10
AB1
B
96 104Right-handed alpha
Helix 11
AB2
B
105 107Right-handed 310
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There are 6 sheets in PDB entry 6VSG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
77 79first strand
Strand 2
A
61 65parallel
Strand 3
A
39 43parallel
Strand 4
A
91 93parallel
Strand 5
A
2 9parallel
Strand 6
A
109 116parallel
Strand 7
A
150 157anti-parallel
Strand 8
A
136 139anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
77 79first strand
Strand 2
A
61 65parallel
Strand 3
A
39 43parallel
Strand 4
A
91 93parallel
Strand 5
A
2 9parallel
Strand 6
A
109 116parallel
Strand 7
A
150 157anti-parallel
Strand 8
A
143 144anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
13 15first strand
Strand 2
A
126 127anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
77 79first strand
Strand 2
B
61 65parallel
Strand 3
B
39 43parallel
Strand 4
B
91 95parallel
Strand 5
B
2 9parallel
Strand 6
B
109 115parallel
Strand 7
B
150 157anti-parallel
Strand 8
B
136 139anti-parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
77 79first strand
Strand 2
B
61 65parallel
Strand 3
B
39 43parallel
Strand 4
B
91 95parallel
Strand 5
B
2 9parallel
Strand 6
B
109 115parallel
Strand 7
B
150 157anti-parallel
Strand 8
B
143 144anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
13 15first strand
Strand 2
B
126 127anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il