Analysis of interatomic Contacts of Structural Units in PDB entry:
6VT1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6VT1 entry

There are 4 chains in PDB entry 6VT1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ARG 339
B	MET 1	ARG 339
C	MET 1	ARG 339
D	MET 1	ARG 339

There are 36 helices in PDB entry 6VT1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	63	68	Right-handed 310
Helix 2	AA2	A	99	105	Right-handed 310
Helix 3	AA3	A	127	131	Right-handed 310
Helix 4	AA4	A	149	152	Right-handed 310
Helix 5	AA5	A	153	160	Right-handed alpha
Helix 6	AA6	A	200	209	Right-handed alpha
Helix 7	AA7	A	210	219	Right-handed alpha
Helix 8	AA8	A	260	274	Right-handed alpha
Helix 9	AA9	A	292	301	Right-handed alpha
Helix 10	AB1	A	329	336	Right-handed alpha
Helix 11	AB2	B	63	70	Right-handed 310
Helix 12	AB3	B	99	105	Right-handed 310
Helix 13	AB4	B	149	152	Right-handed 310
Helix 14	AB5	B	153	160	Right-handed alpha
Helix 15	AB6	B	200	209	Right-handed alpha
Helix 16	AB7	B	210	219	Right-handed alpha
Helix 17	AB8	B	260	274	Right-handed alpha
Helix 18	AB9	B	292	301	Right-handed alpha
Helix 19	AC1	B	329	336	Right-handed alpha
Helix 20	AC2	C	63	70	Right-handed 310
Helix 21	AC3	C	99	105	Right-handed 310
Helix 22	AC4	C	149	152	Right-handed 310
Helix 23	AC5	C	153	160	Right-handed alpha
Helix 24	AC6	C	200	209	Right-handed alpha
Helix 25	AC7	C	210	219	Right-handed alpha
Helix 26	AC8	C	260	274	Right-handed alpha
Helix 27	AC9	C	292	300	Right-handed alpha
Helix 28	AD1	C	329	336	Right-handed alpha
Helix 29	AD2	D	63	68	Right-handed 310
Helix 30	AD3	D	99	105	Right-handed 310
Helix 31	AD4	D	153	160	Right-handed alpha
Helix 32	AD5	D	200	209	Right-handed alpha
Helix 33	AD6	D	210	219	Right-handed alpha
Helix 34	AD7	D	260	274	Right-handed alpha
Helix 35	AD8	D	292	300	Right-handed alpha
Helix 36	AD9	D	329	336	Right-handed alpha

There are 26 sheets in PDB entry 6VT1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	7	11	first strand
Strand 2	A	46	50	anti-parallel
Strand 3	A	94	97	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	15	17	first strand
Strand 2	A	24	29	anti-parallel
Strand 3	A	32	37	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	70	73	first strand
Strand 2	A	76	80	anti-parallel
Strand 3	A	54	57	anti-parallel
Strand 4	A	120	121	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	84	86	first strand
Strand 2	A	89	91	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	134	137	first strand
Strand 2	A	192	194	anti-parallel
Strand 3	A	184	188	anti-parallel
Strand 4	A	174	181	anti-parallel
Strand 5	A	222	230	anti-parallel
Strand 6	A	243	252	anti-parallel
Strand 7	A	257	258	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	134	137	first strand
Strand 2	A	192	194	anti-parallel
Strand 3	A	184	188	anti-parallel
Strand 4	A	174	181	anti-parallel
Strand 5	A	222	230	anti-parallel
Strand 6	A	243	252	anti-parallel
Strand 7	A	279	280	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	287	288	first strand
Strand 2	A	164	170	anti-parallel
Strand 3	A	313	318	anti-parallel
Strand 4	A	324	328	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	7	11	first strand
Strand 2	B	46	50	anti-parallel
Strand 3	B	94	97	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	15	18	first strand
Strand 2	B	21	29	anti-parallel
Strand 3	B	32	37	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	71	73	first strand
Strand 2	B	76	80	anti-parallel
Strand 3	B	54	57	anti-parallel
Strand 4	B	120	121	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	84	86	first strand
Strand 2	B	89	91	anti-parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	134	137	first strand
Strand 2	B	192	194	anti-parallel
Strand 3	B	184	188	anti-parallel
Strand 4	B	174	181	anti-parallel
Strand 5	B	222	230	anti-parallel
Strand 6	B	243	252	anti-parallel
Strand 7	B	257	258	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	283	288	first strand
Strand 2	B	164	170	anti-parallel
Strand 3	B	313	318	anti-parallel
Strand 4	B	324	328	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	32	37	first strand
Strand 2	C	24	29	anti-parallel
Strand 3	C	7	17	anti-parallel
Strand 4	C	46	50	anti-parallel
Strand 5	C	94	97	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	71	73	first strand
Strand 2	C	76	80	anti-parallel
Strand 3	C	54	57	anti-parallel
Strand 4	C	120	121	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	84	86	first strand
Strand 2	C	89	91	anti-parallel

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There are 7 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	134	137	first strand
Strand 2	C	192	194	anti-parallel
Strand 3	C	184	188	anti-parallel
Strand 4	C	174	181	anti-parallel
Strand 5	C	222	230	anti-parallel
Strand 6	C	243	252	anti-parallel
Strand 7	C	257	258	anti-parallel

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There are 7 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	134	137	first strand
Strand 2	C	192	194	anti-parallel
Strand 3	C	184	188	anti-parallel
Strand 4	C	174	181	anti-parallel
Strand 5	C	222	230	anti-parallel
Strand 6	C	243	252	anti-parallel
Strand 7	C	279	280	parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	283	288	first strand
Strand 2	C	164	170	anti-parallel
Strand 3	C	313	318	anti-parallel
Strand 4	C	324	328	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	7	11	first strand
Strand 2	D	46	50	anti-parallel
Strand 3	D	94	97	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	15	17	first strand
Strand 2	D	24	29	anti-parallel
Strand 3	D	32	37	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	70	73	first strand
Strand 2	D	76	80	anti-parallel
Strand 3	D	54	57	anti-parallel
Strand 4	D	120	121	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	84	86	first strand
Strand 2	D	89	91	anti-parallel

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There are 7 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	134	137	first strand
Strand 2	D	192	194	anti-parallel
Strand 3	D	184	188	anti-parallel
Strand 4	D	174	181	anti-parallel
Strand 5	D	222	230	anti-parallel
Strand 6	D	243	252	anti-parallel
Strand 7	D	257	258	anti-parallel

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There are 7 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	134	137	first strand
Strand 2	D	192	194	anti-parallel
Strand 3	D	184	188	anti-parallel
Strand 4	D	174	181	anti-parallel
Strand 5	D	222	230	anti-parallel
Strand 6	D	243	252	anti-parallel
Strand 7	D	279	280	parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	148	149	first strand
Strand 2	D	324	328	parallel
Strand 3	D	313	318	anti-parallel
Strand 4	D	164	170	anti-parallel
Strand 5	D	287	288	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6VT1

Analysis of interatomic Contacts of Structural Units in PDB entry:
6VT1