Analysis of interatomic Contacts of Structural Units in PDB entry:
6VT4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6VT4 entry

There is 1 chain in PDB entry 6VT4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 3ARG 339
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 6VT4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
63 67Right-handed 310
Helix 2
AA2
A
99 105Right-handed 310
Helix 3
AA3
A
113 118Right-handed alpha
Helix 4
AA4
A
149 152Right-handed 310
Helix 5
AA5
A
153 159Right-handed alpha
Helix 6
AA6
A
200 209Right-handed alpha
Helix 7
AA7
A
210 219Right-handed alpha
Helix 8
AA8
A
260 274Right-handed alpha
Helix 9
AA9
A
292 301Right-handed alpha
Helix 10
AB1
A
329 336Right-handed alpha
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There are 7 sheets in PDB entry 6VT4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
7 11first strand
Strand 2
A
46 50anti-parallel
Strand 3
A
94 97anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
15 17first strand
Strand 2
A
24 29anti-parallel
Strand 3
A
32 37anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
71 73first strand
Strand 2
A
76 80anti-parallel
Strand 3
A
54 57anti-parallel
Strand 4
A
120 121anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
84 86first strand
Strand 2
A
89 91anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
134 137first strand
Strand 2
A
192 194anti-parallel
Strand 3
A
184 188anti-parallel
Strand 4
A
174 181anti-parallel
Strand 5
A
222 230anti-parallel
Strand 6
A
243 252anti-parallel
Strand 7
A
257 258anti-parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
134 137first strand
Strand 2
A
192 194anti-parallel
Strand 3
A
184 188anti-parallel
Strand 4
A
174 181anti-parallel
Strand 5
A
222 230anti-parallel
Strand 6
A
243 252anti-parallel
Strand 7
A
279 280parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
287 288first strand
Strand 2
A
164 170anti-parallel
Strand 3
A
313 318anti-parallel
Strand 4
A
324 328anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il