Analysis of interatomic Contacts of Structural Units in PDB entry:
6VTA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6VTA entry

There are 2 chains in PDB entry 6VTA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY -2TRP 178
B
 GLY -2TRP 178
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 14 helices in PDB entry 6VTA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 13Right-handed 310
Helix 2
AA2
A
14 29Right-handed alpha
Helix 3
AA3
A
34 41Right-handed alpha
Helix 4
AA4
A
85 88Right-handed 310
Helix 5
AA5
A
91 108Right-handed alpha
Helix 6
AA6
A
116 126Right-handed alpha
Helix 7
AA7
A
147 150Right-handed 310
Helix 8
AA8
B
11 13Right-handed 310
Helix 9
AA9
B
14 29Right-handed alpha
Helix 10
AB1
B
34 41Right-handed alpha
Helix 11
AB2
B
85 88Right-handed 310
Helix 12
AB3
B
91 108Right-handed alpha
Helix 13
AB4
B
116 126Right-handed alpha
Helix 14
AB5
B
147 150Right-handed 310
Back to top of page

There are 4 sheets in PDB entry 6VTA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
-1 0first strand
Strand 2
A
3 9anti-parallel
Strand 3
A
45 51anti-parallel
Strand 4
A
54 68anti-parallel
Strand 5
A
71 83anti-parallel
Strand 6
A
110 114parallel
Strand 7
A
153 156anti-parallel
Strand 8
A
129 130anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
-1 0first strand
Strand 2
A
3 9anti-parallel
Strand 3
A
45 51anti-parallel
Strand 4
A
54 68anti-parallel
Strand 5
A
168 169anti-parallel
Strand 6
A
135 139parallel
Strand 7
A
142 145anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
-1 0first strand
Strand 2
B
3 9anti-parallel
Strand 3
B
45 51anti-parallel
Strand 4
B
54 68anti-parallel
Strand 5
B
71 83anti-parallel
Strand 6
B
110 114parallel
Strand 7
B
153 156anti-parallel
Strand 8
B
129 130anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
-1 0first strand
Strand 2
B
3 9anti-parallel
Strand 3
B
45 51anti-parallel
Strand 4
B
54 68anti-parallel
Strand 5
B
168 169anti-parallel
Strand 6
B
135 139parallel
Strand 7
B
142 145anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il