Analysis of interatomic Contacts of Structural Units in PDB entry:
6VTH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6VTH entry

There are 4 chains in PDB entry 6VTH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 2SER 200
B
 GLY 3ALA 244
D
 GLU 3SER 200
E
 GLY 3ASP 245
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 6VTH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
79 83Right-handed 310
Helix 2
AA2
A
163 166Right-handed 310
Helix 3
AA3
A
182 186Right-handed 310
Helix 4
AA4
B
82 86Right-handed 310
Helix 5
AA5
B
117 121Right-handed 310
Helix 6
AA6
B
132 140Right-handed alpha
Helix 7
AA7
B
199 204Right-handed alpha
Helix 8
AA8
D
79 83Right-handed 310
Helix 9
AA9
D
163 166Right-handed 310
Helix 10
AB1
D
182 187Right-handed alpha
Helix 11
AB2
E
82 86Right-handed 310
Helix 12
AB3
E
117 121Right-handed 310
Helix 13
AB4
E
132 140Right-handed alpha
Helix 14
AB5
E
199 203Right-handed alpha
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There are 20 sheets in PDB entry 6VTH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 6first strand
Strand 2
A
19 25anti-parallel
Strand 3
A
70 75anti-parallel
Strand 4
A
60 65anti-parallel
Strand 5
A
55 57anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 14first strand
Strand 2
A
104 109parallel
Strand 3
A
84 91anti-parallel
Strand 4
A
32 38anti-parallel
Strand 5
A
45 50anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 14first strand
Strand 2
A
104 109parallel
Strand 3
A
84 91anti-parallel
Strand 4
A
99 100anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
118 123first strand
Strand 2
A
131 136anti-parallel
Strand 3
A
167 176anti-parallel
Strand 4
A
152 154anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
118 123first strand
Strand 2
A
131 136anti-parallel
Strand 3
A
167 176anti-parallel
Strand 4
A
158 162anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 7first strand
Strand 2
B
19 25anti-parallel
Strand 3
B
74 78anti-parallel
Strand 4
B
64 68anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 14first strand
Strand 2
B
110 115parallel
Strand 3
B
87 94anti-parallel
Strand 4
B
31 37anti-parallel
Strand 5
B
43 49anti-parallel
Strand 6
B
56 57anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 14first strand
Strand 2
B
110 115parallel
Strand 3
B
87 94anti-parallel
Strand 4
B
105 106anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
125 129first strand
Strand 2
B
141 151anti-parallel
Strand 3
B
189 198anti-parallel
Strand 4
B
171 173anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
125 129first strand
Strand 2
B
141 151anti-parallel
Strand 3
B
189 198anti-parallel
Strand 4
B
178 179anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
165 167first strand
Strand 2
B
156 162anti-parallel
Strand 3
B
208 215anti-parallel
Strand 4
B
234 241anti-parallel
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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
4 6first strand
Strand 2
D
19 25anti-parallel
Strand 3
D
70 75anti-parallel
Strand 4
D
60 65anti-parallel
Strand 5
D
55 57anti-parallel
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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
11 14first strand
Strand 2
D
104 109parallel
Strand 3
D
84 91anti-parallel
Strand 4
D
32 38anti-parallel
Strand 5
D
45 50anti-parallel
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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
11 14first strand
Strand 2
D
104 109parallel
Strand 3
D
84 91anti-parallel
Strand 4
D
99 100anti-parallel
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There are 8 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
152 154first strand
Strand 2
D
167 176anti-parallel
Strand 3
D
132 136anti-parallel
Strand 4
D
118 124anti-parallel
Strand 5
E
125 130anti-parallel
Strand 6
E
141 151anti-parallel
Strand 7
E
189 198anti-parallel
Strand 8
E
171 173anti-parallel
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There are 8 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
158 162first strand
Strand 2
D
167 176anti-parallel
Strand 3
D
132 136anti-parallel
Strand 4
D
118 124anti-parallel
Strand 5
E
125 130anti-parallel
Strand 6
E
141 151anti-parallel
Strand 7
E
189 198anti-parallel
Strand 8
E
178 179anti-parallel
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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
4 7first strand
Strand 2
E
19 25anti-parallel
Strand 3
E
74 78anti-parallel
Strand 4
E
64 68anti-parallel
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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
10 14first strand
Strand 2
E
110 115parallel
Strand 3
E
87 94anti-parallel
Strand 4
E
31 37anti-parallel
Strand 5
E
43 49anti-parallel
Strand 6
E
56 57anti-parallel
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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
10 14first strand
Strand 2
E
110 115parallel
Strand 3
E
87 94anti-parallel
Strand 4
E
105 106anti-parallel
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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
165 167first strand
Strand 2
E
156 162anti-parallel
Strand 3
E
208 215anti-parallel
Strand 4
E
234 241anti-parallel
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