Analysis of interatomic Contacts of Structural Units in PDB entry:
6VTJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6VTJ entry

There is 1 chain in PDB entry 6VTJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 3703GLU 4187
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 6VTJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3710 3725Right-handed alpha
Helix 2
AA2
A
3741 3755Right-handed alpha
Helix 3
AA3
A
3760 3767Right-handed alpha
Helix 4
AA4
A
3769 3779Right-handed alpha
Helix 5
AA5
A
3790 3796Right-handed alpha
Helix 6
AA6
A
3799 3808Right-handed alpha
Helix 7
AA7
A
3810 3817Right-handed alpha
Helix 8
AA8
A
3832 3846Right-handed alpha
Helix 9
AA9
A
3861 3874Right-handed alpha
Helix 10
AB1
A
3878 3882Right-handed 310
Helix 11
AB2
A
3896 3901Right-handed alpha
Helix 12
AB3
A
3924 3931Right-handed alpha
Helix 13
AB4
A
3931 3943Right-handed alpha
Helix 14
AB5
A
3956 3958Right-handed 310
Helix 15
AB6
A
3964 3968Right-handed 310
Helix 16
AB7
A
3986 4005Right-handed alpha
Helix 17
AB8
A
4029 4032Right-handed 310
Helix 18
AB9
A
4033 4046Right-handed alpha
Helix 19
AC1
A
4049 4055Right-handed alpha
Helix 20
AC2
A
4062 4073Right-handed alpha
Helix 21
AC3
A
4092 4100Right-handed alpha
Helix 22
AC4
A
4101 4103Right-handed 310
Helix 23
AC5
A
4110 4120Right-handed alpha
Helix 24
AC6
A
4121 4122Right-handed 310
Helix 25
AC7
A
4123 4125Right-handed 310
Helix 26
AC8
A
4126 4132Right-handed alpha
Helix 27
AC9
A
4135 4139Right-handed 310
Helix 28
AD1
A
4145 4149Right-handed 310
Helix 29
AD2
A
4151 4161Right-handed alpha
Helix 30
AD3
A
4169 4182Right-handed alpha
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There are 4 sheets in PDB entry 6VTJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3886 3890first strand
Strand 2
A
3850 3854parallel
Strand 3
A
3825 3828parallel
Strand 4
A
3909 3912parallel
Strand 5
A
3948 3954parallel
Strand 6
A
4009 4014parallel
Strand 7
A
4081 4084parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4017 4018first strand
Strand 2
A
4060 4061parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4047 4048first strand
Strand 2
A
4107 4108parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4056 4057first strand
Strand 2
A
4090 4091anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il