Analysis of interatomic Contacts of Structural Units in PDB entry:
6VTL

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6VTL entry

There are 3 chains in PDB entry 6VTL (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 17	HIS 462
C	VAL 17	HIS 462
B	VAL 17	HIS 462

There are 63 helices in PDB entry 6VTL. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	18	24	Right-handed alpha
Helix 2	AA2	A	30	35	Right-handed alpha
Helix 3	AA3	A	41	53	Right-handed alpha
Helix 4	AA4	A	55	71	Right-handed alpha
Helix 5	AA5	A	107	112	Right-handed alpha
Helix 6	AA6	A	132	141	Right-handed alpha
Helix 7	AA7	A	154	162	Right-handed alpha
Helix 8	AA8	A	165	170	Right-handed alpha
Helix 9	AA9	A	181	185	Right-handed 310
Helix 10	AB1	A	226	230	Right-handed 310
Helix 11	AB2	A	258	263	Right-handed alpha
Helix 12	AB3	A	305	323	Right-handed alpha
Helix 13	AB4	A	337	344	Right-handed alpha
Helix 14	AB5	A	344	354	Right-handed alpha
Helix 15	AB6	A	356	360	Right-handed 310
Helix 16	AB7	A	382	384	Right-handed 310
Helix 17	AB8	A	385	392	Right-handed alpha
Helix 18	AB9	A	396	403	Right-handed alpha
Helix 19	AC1	A	426	432	Right-handed alpha
Helix 20	AC2	A	434	442	Right-handed alpha
Helix 21	AC3	A	445	460	Right-handed alpha
Helix 22	AC4	C	18	24	Right-handed alpha
Helix 23	AC5	C	30	35	Right-handed alpha
Helix 24	AC6	C	41	53	Right-handed alpha
Helix 25	AC7	C	55	71	Right-handed alpha
Helix 26	AC8	C	107	112	Right-handed alpha
Helix 27	AC9	C	132	141	Right-handed alpha
Helix 28	AD1	C	154	162	Right-handed alpha
Helix 29	AD2	C	165	170	Right-handed alpha
Helix 30	AD3	C	181	185	Right-handed 310
Helix 31	AD4	C	226	230	Right-handed 310
Helix 32	AD5	C	258	263	Right-handed alpha
Helix 33	AD6	C	305	323	Right-handed alpha
Helix 34	AD7	C	337	344	Right-handed alpha
Helix 35	AD8	C	344	354	Right-handed alpha
Helix 36	AD9	C	356	360	Right-handed 310
Helix 37	AE1	C	382	384	Right-handed 310
Helix 38	AE2	C	385	392	Right-handed alpha
Helix 39	AE3	C	396	403	Right-handed alpha
Helix 40	AE4	C	426	432	Right-handed alpha
Helix 41	AE5	C	434	442	Right-handed alpha
Helix 42	AE6	C	445	460	Right-handed alpha
Helix 43	AE7	B	18	24	Right-handed alpha
Helix 44	AE8	B	30	35	Right-handed alpha
Helix 45	AE9	B	41	53	Right-handed alpha
Helix 46	AF1	B	55	71	Right-handed alpha
Helix 47	AF2	B	107	112	Right-handed alpha
Helix 48	AF3	B	132	141	Right-handed alpha
Helix 49	AF4	B	154	162	Right-handed alpha
Helix 50	AF5	B	165	170	Right-handed alpha
Helix 51	AF6	B	181	185	Right-handed 310
Helix 52	AF7	B	226	230	Right-handed 310
Helix 53	AF8	B	258	263	Right-handed alpha
Helix 54	AF9	B	305	323	Right-handed alpha
Helix 55	AG1	B	337	344	Right-handed alpha
Helix 56	AG2	B	344	354	Right-handed alpha
Helix 57	AG3	B	356	360	Right-handed 310
Helix 58	AG4	B	382	384	Right-handed 310
Helix 59	AG5	B	385	392	Right-handed alpha
Helix 60	AG6	B	396	403	Right-handed alpha
Helix 61	AG7	B	426	432	Right-handed alpha
Helix 62	AG8	B	434	442	Right-handed alpha
Helix 63	AG9	B	445	460	Right-handed alpha

There are 15 sheets in PDB entry 6VTL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	74	82	first strand
Strand 2	A	415	423	anti-parallel
Strand 3	A	270	282	parallel
Strand 4	A	404	411	parallel
Strand 5	A	221	224	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	74	82	first strand
Strand 2	A	415	423	anti-parallel
Strand 3	A	270	282	parallel
Strand 4	A	367	379	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	86	87	first strand
Strand 2	A	209	210	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	186	190	first strand
Strand 2	A	193	197	anti-parallel
Strand 3	A	90	95	anti-parallel
Strand 4	A	246	251	anti-parallel
Strand 5	A	264	266	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	174	175	first strand
Strand 2	A	178	179	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	74	82	first strand
Strand 2	C	415	423	anti-parallel
Strand 3	C	270	282	parallel
Strand 4	C	404	411	parallel
Strand 5	C	221	224	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	74	82	first strand
Strand 2	C	415	423	anti-parallel
Strand 3	C	270	282	parallel
Strand 4	C	367	379	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	86	87	first strand
Strand 2	C	209	210	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	186	190	first strand
Strand 2	C	193	197	anti-parallel
Strand 3	C	90	95	anti-parallel
Strand 4	C	246	251	anti-parallel
Strand 5	C	264	266	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	174	175	first strand
Strand 2	C	178	179	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	74	82	first strand
Strand 2	B	415	423	anti-parallel
Strand 3	B	270	282	parallel
Strand 4	B	404	411	parallel
Strand 5	B	221	224	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	74	82	first strand
Strand 2	B	415	423	anti-parallel
Strand 3	B	270	282	parallel
Strand 4	B	367	379	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	86	87	first strand
Strand 2	B	209	210	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	186	190	first strand
Strand 2	B	193	197	anti-parallel
Strand 3	B	90	95	anti-parallel
Strand 4	B	246	251	anti-parallel
Strand 5	B	264	266	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	174	175	first strand
Strand 2	B	178	179	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6VTL

Analysis of interatomic Contacts of Structural Units in PDB entry:
6VTL