Analysis of interatomic Contacts of Structural Units in PDB entry:
6VTT

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6VTT entry

There are 9 chains in PDB entry 6VTT (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
F	LEU 34	THR 504
E	LEU 34	THR 504
G	LEU 34	VAL 505
H	VAL 2	ASP 100
H	ASP 100	SER 112
L	GLN 1	VAL 104
A	GLY 513	ASN 660
B	VAL 511	THR 662
C	GLY 513	THR 662

There are 37 helices in PDB entry 6VTT. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	F	99	116	Right-handed alpha
Helix 2	AA2	F	335	349	Right-handed alpha
Helix 3	AA3	F	350	353	Right-handed 310
Helix 4	AA4	F	425	429	Right-handed 310
Helix 5	AA5	F	475	479	Right-handed 310
Helix 6	AA6	E	99	115	Right-handed alpha
Helix 7	AA7	E	123	126	Right-handed 310
Helix 8	AA8	E	335	340	Right-handed alpha
Helix 9	AA9	E	340	349	Right-handed alpha
Helix 10	AB1	E	425	429	Right-handed 310
Helix 11	AB2	E	476	481	Right-handed alpha
Helix 12	AB3	G	99	117	Right-handed alpha
Helix 13	AB4	G	334	356	Right-handed alpha
Helix 14	AB5	G	425	429	Right-handed 310
Helix 15	AB6	H	28	32	Right-handed 310
Helix 16	AB7	H	61	64	Right-handed 310
Helix 17	AB8	H	83	87	Right-handed 310
Helix 18	AB9	L	79	83	Right-handed 310
Helix 19	AC1	A	514	522	Right-handed alpha
Helix 20	AC2	A	523	526	Right-handed 310
Helix 21	AC3	A	529	542	Right-handed alpha
Helix 22	AC4	A	569	596	Right-handed alpha
Helix 23	AC5	A	618	623	Right-handed alpha
Helix 24	AC6	A	627	636	Right-handed alpha
Helix 25	AC7	A	638	659	Right-handed alpha
Helix 26	AC8	B	529	541	Right-handed alpha
Helix 27	AC9	B	569	595	Right-handed alpha
Helix 28	AD1	B	618	623	Right-handed alpha
Helix 29	AD2	B	627	636	Right-handed alpha
Helix 30	AD3	B	637	639	Right-handed 310
Helix 31	AD4	B	640	658	Right-handed alpha
Helix 32	AD5	C	514	520	Right-handed alpha
Helix 33	AD6	C	532	543	Right-handed alpha
Helix 34	AD7	C	569	595	Right-handed alpha
Helix 35	AD8	C	618	623	Right-handed alpha
Helix 36	AD9	C	627	633	Right-handed alpha
Helix 37	AE1	C	639	659	Right-handed alpha

There are 38 sheets in PDB entry 6VTT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	35	40	first strand
Strand 2	F	494	499	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	45	47	first strand
Strand 2	F	487	491	anti-parallel
Strand 3	F	223	228	anti-parallel
Strand 4	F	242	245	anti-parallel
Strand 5	F	83	85	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	92	93	first strand
Strand 2	F	237	238	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	130	133	first strand
Strand 2	F	154	158	anti-parallel
Strand 3	F	174	177	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	160	162	first strand
Strand 2	F	169	171	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	181	185	first strand
Strand 2	F	190	193	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	202	203	first strand
Strand 2	F	434	435	parallel
Strand 3	F	423	424	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	259	260	first strand
Strand 2	F	444	455	anti-parallel
Strand 3	F	283	297	anti-parallel
Strand 4	F	271	273	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	259	260	first strand
Strand 2	F	444	455	anti-parallel
Strand 3	F	283	297	anti-parallel
Strand 4	F	330	334	anti-parallel
Strand 5	F	413	420	anti-parallel
Strand 6	F	381	385	anti-parallel
Strand 7	F	374	378	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	304	312	first strand
Strand 2	F	315	320	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	358	361	first strand
Strand 2	F	465	468	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	494	499	first strand
Strand 2	E	35	40	anti-parallel
Strand 3	C	605	609	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	45	47	first strand
Strand 2	E	486	491	anti-parallel
Strand 3	E	223	228	anti-parallel
Strand 4	E	242	245	anti-parallel
Strand 5	E	84	85	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	91	93	first strand
Strand 2	E	237	239	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	120	121	first strand
Strand 2	E	202	203	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	131	132	first strand
Strand 2	E	154	162	anti-parallel
Strand 3	E	169	177	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	181	185	first strand
Strand 2	E	190	193	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	271	273	first strand
Strand 2	E	284	287	anti-parallel
Strand 3	E	453	456	anti-parallel
Strand 4	E	466	470	anti-parallel
Strand 5	E	359	361	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	292	297	first strand
Strand 2	E	444	449	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	301	308	first strand
Strand 2	E	316	323	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	330	331	first strand
Strand 2	E	416	417	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	376	378	first strand
Strand 2	E	381	384	anti-parallel
Strand 3	E	419	420	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	423	424	first strand
Strand 2	E	434	435	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	494	499	first strand
Strand 2	G	35	40	anti-parallel
Strand 3	B	603	609	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	45	47	first strand
Strand 2	G	486	491	anti-parallel
Strand 3	G	223	227	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	91	92	first strand
Strand 2	G	238	239	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	132	133	first strand
Strand 2	G	154	162	anti-parallel
Strand 3	G	168	177	anti-parallel
Strand 4	H	100	100	anti-parallel
Strand 5	H	100	100	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	181	183	first strand
Strand 2	G	191	193	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	201	203	first strand
Strand 2	G	433	435	parallel
Strand 3	G	423	424	anti-parallel

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There are 5 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	271	273	first strand
Strand 2	G	284	287	anti-parallel
Strand 3	G	452	455	anti-parallel
Strand 4	G	466	470	anti-parallel
Strand 5	G	359	361	parallel

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There are 6 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	377	378	first strand
Strand 2	G	381	385	anti-parallel
Strand 3	G	414	421	anti-parallel
Strand 4	G	330	333	anti-parallel
Strand 5	G	292	297	anti-parallel
Strand 6	G	444	449	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	304	308	first strand
Strand 2	G	316	320	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	7	first strand
Strand 2	H	17	25	anti-parallel
Strand 3	H	78	82	anti-parallel
Strand 4	H	68	71	anti-parallel

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There are 6 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	107	111	parallel
Strand 3	H	89	94	anti-parallel
Strand 4	H	34	39	anti-parallel
Strand 5	H	45	51	anti-parallel
Strand 6	H	57	59	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	107	111	parallel
Strand 3	H	89	94	anti-parallel
Strand 4	H	102	103	anti-parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	19	24	first strand
Strand 2	L	70	75	anti-parallel
Strand 3	L	64	67	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	45	48	first strand
Strand 2	L	33	38	anti-parallel
Strand 3	L	85	90	anti-parallel
Strand 4	L	97	98	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	45	48	first strand
Strand 2	L	33	38	anti-parallel
Strand 3	L	85	90	anti-parallel
Strand 4	L	102	103	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6VTT

Analysis of interatomic Contacts of Structural Units in PDB entry:
6VTT