Analysis of interatomic Contacts of Structural Units in PDB entry:
6VTV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6VTV entry

There are 2 chains in PDB entry 6VTV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 10LEU 258
B
 ASN 7LEU 258
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 6VTV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
33 43Right-handed alpha
Helix 2
AA2
A
50 54Right-handed 310
Helix 3
AA3
A
55 63Right-handed alpha
Helix 4
AA4
A
64 66Right-handed 310
Helix 5
AA5
A
79 84Right-handed 310
Helix 6
AA6
A
93 111Right-handed alpha
Helix 7
AA7
A
118 128Right-handed alpha
Helix 8
AA8
A
135 139Right-handed 310
Helix 9
AA9
A
152 157Right-handed alpha
Helix 10
AB1
A
169 175Right-handed alpha
Helix 11
AB2
A
230 233Right-handed 310
Helix 12
AB3
A
234 258Right-handed alpha
Helix 13
AB4
B
33 43Right-handed alpha
Helix 14
AB5
B
50 54Right-handed 310
Helix 15
AB6
B
55 63Right-handed alpha
Helix 16
AB7
B
64 66Right-handed 310
Helix 17
AB8
B
79 84Right-handed 310
Helix 18
AB9
B
93 110Right-handed alpha
Helix 19
AC1
B
118 128Right-handed alpha
Helix 20
AC2
B
135 139Right-handed 310
Helix 21
AC3
B
152 157Right-handed alpha
Helix 22
AC4
B
169 175Right-handed alpha
Helix 23
AC5
B
230 233Right-handed 310
Helix 24
AC6
B
234 255Right-handed alpha
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There are 5 sheets in PDB entry 6VTV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
45 49first strand
Strand 2
A
13 17parallel
Strand 3
A
68 71parallel
Strand 4
A
114 117parallel
Strand 5
A
220 223parallel
Strand 6
A
209 214anti-parallel
Strand 7
A
198 203anti-parallel
Strand 8
A
161 165anti-parallel
Strand 9
A
180 183anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
19 23first strand
Strand 2
A
26 32anti-parallel
Strand 3
B
26 32anti-parallel
Strand 4
B
19 23anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
132 133first strand
Strand 2
A
190 191anti-parallel
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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
45 49first strand
Strand 2
B
13 17parallel
Strand 3
B
68 71parallel
Strand 4
B
114 117parallel
Strand 5
B
220 223parallel
Strand 6
B
209 214anti-parallel
Strand 7
B
198 203anti-parallel
Strand 8
B
161 165anti-parallel
Strand 9
B
180 183anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
132 133first strand
Strand 2
B
190 191anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il