Analysis of interatomic
Contacts of Structural
Units in PDB entry:
Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332).
This page provides analyses of
contacts formed by:
For analysis of ligand-protein contacts, use:
3D structure can be seen in additional window with
STING software for 6VU4 entry
There are 8 chains in PDB entry 6VU4
(CSU analysis of residue contacts immediately below table)
| Chain ID |
Initial residue | Terminal residue |
C
|
HIS 1 | HIS 1 |
C
|
LYS 3 | VAL 5 |
C
|
PHE 7 | GLU 9 |
C
|
ALA 11 | VAL 17 |
A
|
HIS 1 | HIS 1 |
A
|
LYS 3 | VAL 5 |
A
|
PHE 7 | GLU 9 |
A
|
ALA 11 | VAL 17 |
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There are no helices in PDB entry
6VU4
There is
1 sheet (AA1) in PDB entry 6VU4.
There are 4
strands in AA1 sheet. Click on strand of interest
for CSU analysis.
Strand number
| Chain ID |
Initial residue | Terminal residue |
Strand sense |
| Strand 1 |
C
| 3 |
8 | first strand |
| Strand 2 |
C
| 11 |
17 | anti-parallel |
| Strand 3 |
A
| 12 |
17 | anti-parallel |
| Strand 4 |
A
| 3 |
8 | anti-parallel |
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Please mail
questions/suggestions concerning this page
to
Vladimir.Sobolev@weizmann.
ac.il