Analysis of interatomic Contacts of Structural Units in PDB entry:
6VU5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6VU5 entry


Note, this PDB entry contains modified residue(s) PHOSPHOTHREONINE (TPO) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 4 chains in PDB entry 6VU5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 0TYR 434
A
 GLU 436ASP 439
A
 ASP 441UNK 484
B
 ILE 217VAL 359
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 6VU5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 12Right-handed alpha
Helix 2
AA2
A
19 29Right-handed alpha
Helix 3
AA3
A
36 38Right-handed 310
Helix 4
AA4
A
39 57Right-handed alpha
Helix 5
AA5
A
64 74Right-handed alpha
Helix 6
AA6
A
75 80Right-handed 310
Helix 7
AA7
A
85 96Right-handed alpha
Helix 8
AA8
A
111 127Right-handed alpha
Helix 9
AA9
A
128 138Right-handed alpha
Helix 10
AB1
A
140 150Right-handed alpha
Helix 11
AB2
A
157 174Right-handed alpha
Helix 12
AB3
A
187 200Right-handed alpha
Helix 13
AB4
A
213 232Right-handed alpha
Helix 14
AB5
A
242 260Right-handed alpha
Helix 15
AB6
A
266 280Right-handed alpha
Helix 16
AB7
A
282 287Right-handed 310
Helix 17
AB8
A
313 320Right-handed alpha
Helix 18
AB9
A
332 341Right-handed alpha
Helix 19
AC1
A
350 356Right-handed alpha
Helix 20
AC2
A
371 380Right-handed alpha
Helix 21
AC3
A
384 389Right-handed alpha
Helix 22
AC4
A
389 398Right-handed alpha
Helix 23
AC5
A
402 411Right-handed alpha
Helix 24
AC6
A
413 417Right-handed 310
Helix 25
AC7
A
474 483Right-handed alpha
Helix 26
AC8
B
246 255Right-handed alpha
Helix 27
AC9
B
255 260Right-handed alpha
Helix 28
AD1
B
275 279Right-handed 310
Helix 29
AD2
B
287 291Right-handed 310
Helix 30
AD3
B
303 315Right-handed alpha
Helix 31
AD4
B
338 354Right-handed alpha
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There are 2 sheets in PDB entry 6VU5. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
211 212first strand
Strand 2
A
261 262parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
268 272first strand
Strand 2
B
323 327parallel
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