Analysis of interatomic Contacts of Structural Units in PDB entry:
6VU8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6VU8 entry


Note, this PDB entry contains modified residue(s) PHOSPHOTHREONINE (TPO) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 4 chains in PDB entry 6VU8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY -2TYR 434
A
 GLU 436ASP 439
A
 ASP 441LEU 482
B
 ARG 32PHE 354
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 6VU8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 11Right-handed alpha
Helix 2
AA2
A
14 29Right-handed alpha
Helix 3
AA3
A
39 57Right-handed alpha
Helix 4
AA4
A
62 75Right-handed alpha
Helix 5
AA5
A
85 97Right-handed alpha
Helix 6
AA6
A
110 127Right-handed alpha
Helix 7
AA7
A
128 138Right-handed alpha
Helix 8
AA8
A
140 151Right-handed alpha
Helix 9
AA9
A
157 173Right-handed alpha
Helix 10
AB1
A
175 184Right-handed alpha
Helix 11
AB2
A
187 201Right-handed alpha
Helix 12
AB3
A
213 231Right-handed alpha
Helix 13
AB4
A
240 260Right-handed alpha
Helix 14
AB5
A
266 280Right-handed alpha
Helix 15
AB6
A
282 286Right-handed 310
Helix 16
AB7
A
288 292Right-handed 310
Helix 17
AB8
A
306 321Right-handed alpha
Helix 18
AB9
A
331 342Right-handed alpha
Helix 19
AC1
A
344 356Right-handed alpha
Helix 20
AC2
A
371 380Right-handed alpha
Helix 21
AC3
A
384 398Right-handed alpha
Helix 22
AC4
A
411 423Right-handed alpha
Helix 23
AC5
A
477 482Right-handed alpha
Helix 24
AC6
B
45 53Right-handed alpha
Helix 25
AC7
B
241 255Right-handed alpha
Helix 26
AC8
B
256 260Right-handed 310
Helix 27
AC9
B
270 279Right-handed alpha
Helix 28
AD1
B
295 310Right-handed alpha
Helix 29
AD2
B
336 351Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 6VU8.

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
220 225first strand
Strand 2
B
263 268parallel
Strand 3
B
318 323parallel
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