Analysis of interatomic Contacts of Structural Units in PDB entry:
6VU9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6VU9 entry

There is 1 chain in PDB entry 6VU9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 3ALA 633
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 6VU9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
20 28Right-handed alpha
Helix 2
AA2
A
28 34Right-handed alpha
Helix 3
AA3
A
64 87Right-handed alpha
Helix 4
AA4
A
113 129Right-handed alpha
Helix 5
AA5
A
141 151Right-handed alpha
Helix 6
AA6
A
153 161Right-handed alpha
Helix 7
AA7
A
189 194Right-handed 310
Helix 8
AA8
A
207 209Right-handed 310
Helix 9
AA9
A
225 241Right-handed alpha
Helix 10
AB1
A
243 251Right-handed alpha
Helix 11
AB2
A
267 288Right-handed alpha
Helix 12
AB3
A
301 307Right-handed alpha
Helix 13
AB4
A
309 314Right-handed alpha
Helix 14
AB5
A
333 344Right-handed alpha
Helix 15
AB6
A
366 370Right-handed 310
Helix 16
AB7
A
389 391Right-handed 310
Helix 17
AB8
A
392 411Right-handed alpha
Helix 18
AB9
A
430 448Right-handed alpha
Helix 19
AC1
A
488 493Right-handed alpha
Helix 20
AC2
A
517 529Right-handed alpha
Helix 21
AC3
A
551 565Right-handed alpha
Helix 22
AC4
A
577 588Right-handed alpha
Helix 23
AC5
A
597 604Right-handed alpha
Helix 24
AC6
A
621 631Right-handed alpha
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There are 11 sheets in PDB entry 6VU9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 12first strand
Strand 2
A
4 5anti-parallel
Strand 3
A
55 56parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
18 19first strand
Strand 2
A
50 51anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 46first strand
Strand 2
A
35 40anti-parallel
Strand 3
A
59 61anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
91 92first strand
Strand 2
A
101 107anti-parallel
Strand 3
A
97 98anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
91 92first strand
Strand 2
A
101 107anti-parallel
Strand 3
A
214 222anti-parallel
Strand 4
A
196 205anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
135 140first strand
Strand 2
A
169 175anti-parallel
Strand 3
A
178 181anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
254 257first strand
Strand 2
A
260 266anti-parallel
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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
291 292first strand
Strand 2
A
353 362parallel
Strand 3
A
378 388anti-parallel
Strand 4
A
508 513anti-parallel
Strand 5
A
477 486anti-parallel
Strand 6
A
465 471anti-parallel
Strand 7
A
416 421anti-parallel
Strand 8
A
453 455parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
298 300first strand
Strand 2
A
325 329anti-parallel
Strand 3
A
319 322anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
497 498first strand
Strand 2
A
504 505anti-parallel
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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
569 572first strand
Strand 2
A
542 546parallel
Strand 3
A
592 596parallel
Strand 4
A
605 610anti-parallel
Strand 5
A
615 620anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il