Analysis of interatomic Contacts of Structural Units in PDB entry:
6VUG

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6VUG entry

There are 7 chains in PDB entry 6VUG (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 2	VAL 552
B	ILE 5	GLN 428
C	GLY 127	LYS 236
D	MET 1	SER 124
E	A 0	C 1
E	C 3	C 3
E	C 5	G 33

There are 36 helices in PDB entry 6VUG. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	27	45	Right-handed alpha
Helix 2	AA2	A	77	82	Right-handed alpha
Helix 3	AA3	A	96	100	Right-handed 310
Helix 4	AA4	A	114	118	Right-handed 310
Helix 5	AA5	A	121	127	Right-handed 310
Helix 6	AA6	A	154	175	Right-handed alpha
Helix 7	AA7	A	194	213	Right-handed alpha
Helix 8	AA8	A	253	268	Right-handed alpha
Helix 9	AA9	A	276	281	Right-handed alpha
Helix 10	AB1	A	296	312	Right-handed alpha
Helix 11	AB2	A	363	383	Right-handed alpha
Helix 12	AB3	A	394	405	Right-handed alpha
Helix 13	AB4	A	473	488	Right-handed alpha
Helix 14	AB5	A	499	507	Right-handed alpha
Helix 15	AB6	A	515	528	Right-handed alpha
Helix 16	AB7	A	544	551	Right-handed alpha
Helix 17	AB8	B	27	44	Right-handed alpha
Helix 18	AB9	B	77	82	Right-handed alpha
Helix 19	AC1	B	99	103	Right-handed 310
Helix 20	AC2	B	112	118	Right-handed 310
Helix 21	AC3	B	121	129	Right-handed 310
Helix 22	AC4	B	134	138	Right-handed 310
Helix 23	AC5	B	154	160	Right-handed alpha
Helix 24	AC6	B	160	175	Right-handed alpha
Helix 25	AC7	B	196	212	Right-handed alpha
Helix 26	AC8	B	227	231	Right-handed 310
Helix 27	AC9	B	235	239	Right-handed 310
Helix 28	AD1	B	254	268	Right-handed alpha
Helix 29	AD2	B	276	281	Right-handed alpha
Helix 30	AD3	B	282	284	Right-handed 310
Helix 31	AD4	B	296	312	Right-handed alpha
Helix 32	AD5	B	363	383	Right-handed alpha
Helix 33	AD6	B	394	402	Right-handed alpha
Helix 34	AD7	B	403	406	Right-handed 310
Helix 35	AD8	C	208	212	Right-handed 310
Helix 36	AD9	D	89	93	Right-handed 310

There are 18 sheets in PDB entry 6VUG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	47	48	first strand
Strand 2	A	144	146	anti-parallel
Strand 3	A	129	130	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	60	62	first strand
Strand 2	A	73	75	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	179	183	first strand
Strand 2	A	186	191	anti-parallel
Strand 3	A	105	110	anti-parallel
Strand 4	A	221	222	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	227	229	first strand
Strand 2	A	232	234	anti-parallel
Strand 3	A	239	241	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	347	354	first strand
Strand 2	A	337	344	anti-parallel
Strand 3	A	326	331	anti-parallel
Strand 4	A	388	391	parallel
Strand 5	A	414	416	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	361	362	first strand
Strand 2	A	512	513	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	464	470	first strand
Strand 2	A	452	458	anti-parallel
Strand 3	A	439	446	anti-parallel
Strand 4	A	492	497	parallel
Strand 5	A	530	535	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	50	first strand
Strand 2	B	142	146	anti-parallel
Strand 3	B	130	132	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	60	61	first strand
Strand 2	B	74	75	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	179	183	first strand
Strand 2	B	186	191	anti-parallel
Strand 3	B	105	110	anti-parallel
Strand 4	B	233	234	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	252	253	first strand
Strand 2	B	292	293	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	348	354	first strand
Strand 2	B	336	342	anti-parallel
Strand 3	B	326	333	anti-parallel
Strand 4	B	388	391	parallel
Strand 5	B	414	416	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	133	136	first strand
Strand 2	C	148	154	anti-parallel
Strand 3	C	199	204	anti-parallel
Strand 4	C	191	196	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	139	142	first strand
Strand 2	C	231	235	parallel
Strand 3	C	214	219	anti-parallel
Strand 4	C	162	167	anti-parallel
Strand 5	C	174	178	anti-parallel
Strand 6	C	182	183	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	139	142	first strand
Strand 2	C	231	235	parallel
Strand 3	C	214	219	anti-parallel
Strand 4	C	226	227	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	8	first strand
Strand 2	D	19	26	anti-parallel
Strand 3	D	80	85	anti-parallel
Strand 4	D	70	75	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	13	first strand
Strand 2	D	118	122	parallel
Strand 3	D	94	103	anti-parallel
Strand 4	D	35	42	anti-parallel
Strand 5	D	48	55	anti-parallel
Strand 6	D	60	62	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	13	first strand
Strand 2	D	118	122	parallel
Strand 3	D	94	103	anti-parallel
Strand 4	D	109	112	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6VUG

Analysis of interatomic Contacts of Structural Units in PDB entry:
6VUG