Analysis of interatomic Contacts of Structural Units in PDB entry:
6VUN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6VUN entry

There are 2 chains in PDB entry 6VUN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 3LYS 236
B
 MET 1LYS 236
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 7 helices in PDB entry 6VUN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
31 35Right-handed 310
Helix 2
AA2
A
76 78Right-handed 310
Helix 3
AA3
A
89 93Right-handed 310
Helix 4
AA4
A
208 212Right-handed 310
Helix 5
AA5
B
76 78Right-handed 310
Helix 6
AA6
B
89 93Right-handed 310
Helix 7
AA7
B
208 212Right-handed 310
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There are 11 sheets in PDB entry 6VUN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 8first strand
Strand 2
A
19 26anti-parallel
Strand 3
A
80 85anti-parallel
Strand 4
A
70 75anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 13first strand
Strand 2
A
118 122parallel
Strand 3
A
94 101anti-parallel
Strand 4
A
37 42anti-parallel
Strand 5
A
48 55anti-parallel
Strand 6
A
59 62anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 13first strand
Strand 2
A
118 122parallel
Strand 3
A
94 101anti-parallel
Strand 4
A
111 112anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
133 136first strand
Strand 2
A
148 154anti-parallel
Strand 3
A
199 204anti-parallel
Strand 4
A
191 196anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
139 142first strand
Strand 2
A
231 235parallel
Strand 3
A
213 219anti-parallel
Strand 4
A
162 167anti-parallel
Strand 5
A
174 178anti-parallel
Strand 6
A
182 183anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
139 142first strand
Strand 2
A
231 235parallel
Strand 3
A
213 219anti-parallel
Strand 4
A
226 227anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 8first strand
Strand 2
B
19 26anti-parallel
Strand 3
B
80 85anti-parallel
Strand 4
B
70 75anti-parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
12 13first strand
Strand 2
B
118 122parallel
Strand 3
B
94 102anti-parallel
Strand 4
B
35 42anti-parallel
Strand 5
B
48 53anti-parallel
Strand 6
B
61 62anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
133 136first strand
Strand 2
B
148 154anti-parallel
Strand 3
B
199 204anti-parallel
Strand 4
B
191 196anti-parallel
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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
139 142first strand
Strand 2
B
231 235parallel
Strand 3
B
213 219anti-parallel
Strand 4
B
162 167anti-parallel
Strand 5
B
174 178anti-parallel
Strand 6
B
182 183anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
139 142first strand
Strand 2
B
231 235parallel
Strand 3
B
213 219anti-parallel
Strand 4
B
226 227anti-parallel
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