Analysis of interatomic Contacts of Structural Units in PDB entry:
6VUQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6VUQ entry

There are 4 chains in PDB entry 6VUQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 1THR 161
B
 ALA 2ARG 160
C
 ALA 2THR 161
D
 PRO 3THR 161
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 6VUQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 15Right-handed 310
Helix 2
AA2
A
32 42Right-handed alpha
Helix 3
AA3
A
43 47Right-handed 310
Helix 4
AA4
A
78 101Right-handed alpha
Helix 5
AA5
A
121 134Right-handed alpha
Helix 6
AA6
A
146 159Right-handed alpha
Helix 7
AA7
B
11 15Right-handed 310
Helix 8
AA8
B
32 42Right-handed alpha
Helix 9
AA9
B
43 47Right-handed 310
Helix 10
AB1
B
78 101Right-handed alpha
Helix 11
AB2
B
121 134Right-handed alpha
Helix 12
AB3
B
146 160Right-handed alpha
Helix 13
AB4
C
11 15Right-handed 310
Helix 14
AB5
C
32 42Right-handed alpha
Helix 15
AB6
C
43 47Right-handed 310
Helix 16
AB7
C
78 101Right-handed alpha
Helix 17
AB8
C
121 134Right-handed alpha
Helix 18
AB9
C
146 160Right-handed alpha
Helix 19
AC1
D
11 15Right-handed 310
Helix 20
AC2
D
33 42Right-handed alpha
Helix 21
AC3
D
43 47Right-handed 310
Helix 22
AC4
D
78 101Right-handed alpha
Helix 23
AC5
D
121 134Right-handed alpha
Helix 24
AC6
D
146 161Right-handed alpha
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There are 8 sheets in PDB entry 6VUQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 9first strand
Strand 2
A
139 144parallel
Strand 3
A
104 107parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 23first strand
Strand 2
A
64 69parallel
Strand 3
A
56 61anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
5 9first strand
Strand 2
B
139 144parallel
Strand 3
B
104 107parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
20 23first strand
Strand 2
B
64 69parallel
Strand 3
B
56 61anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
5 9first strand
Strand 2
C
139 144parallel
Strand 3
C
104 107parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
20 23first strand
Strand 2
C
64 69parallel
Strand 3
C
56 61anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
5 9first strand
Strand 2
D
139 144parallel
Strand 3
D
104 107parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
20 23first strand
Strand 2
D
64 69parallel
Strand 3
D
56 61anti-parallel
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