Analysis of interatomic Contacts of Structural Units in PDB entry:
6VV5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6VV5 entry

There are 3 chains in PDB entry 6VV5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 31	GLU 1254
B	ASN 31	GLU 1254
C	ASN 31	GLU 1254

There are 72 helices in PDB entry 6VV5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	31	37	Right-handed alpha
Helix 2	AA2	A	233	241	Right-handed alpha
Helix 3	AA3	A	326	331	Right-handed alpha
Helix 4	AA4	A	466	475	Right-handed alpha
Helix 5	AA5	A	577	581	Right-handed 310
Helix 6	AA6	A	807	813	Right-handed alpha
Helix 7	AA7	A	816	824	Right-handed alpha
Helix 8	AA8	A	826	852	Right-handed alpha
Helix 9	AA9	A	855	860	Right-handed alpha
Helix 10	AB1	A	895	906	Right-handed alpha
Helix 11	AB2	A	928	936	Right-handed alpha
Helix 12	AB3	A	946	960	Right-handed alpha
Helix 13	AB4	A	961	963	Right-handed 310
Helix 14	AB5	A	973	986	Right-handed alpha
Helix 15	AB6	A	993	1014	Right-handed alpha
Helix 16	AB7	A	1016	1020	Right-handed 310
Helix 17	AB8	A	1030	1044	Right-handed alpha
Helix 18	AB9	A	1048	1055	Right-handed alpha
Helix 19	AC1	A	1056	1058	Right-handed 310
Helix 20	AC2	A	1066	1072	Right-handed alpha
Helix 21	AC3	A	1075	1123	Right-handed alpha
Helix 22	AC4	A	1216	1218	Right-handed 310
Helix 23	AC5	A	1237	1241	Right-handed 310
Helix 24	AC6	A	1247	1254	Right-handed alpha
Helix 25	AC7	B	32	37	Right-handed alpha
Helix 26	AC8	B	233	241	Right-handed alpha
Helix 27	AC9	B	326	331	Right-handed alpha
Helix 28	AD1	B	466	475	Right-handed alpha
Helix 29	AD2	B	577	581	Right-handed 310
Helix 30	AD3	B	807	813	Right-handed alpha
Helix 31	AD4	B	816	824	Right-handed alpha
Helix 32	AD5	B	826	852	Right-handed alpha
Helix 33	AD6	B	855	860	Right-handed alpha
Helix 34	AD7	B	895	906	Right-handed alpha
Helix 35	AD8	B	928	936	Right-handed alpha
Helix 36	AD9	B	946	960	Right-handed alpha
Helix 37	AE1	B	961	963	Right-handed 310
Helix 38	AE2	B	973	986	Right-handed alpha
Helix 39	AE3	B	993	1014	Right-handed alpha
Helix 40	AE4	B	1016	1020	Right-handed 310
Helix 41	AE5	B	1030	1044	Right-handed alpha
Helix 42	AE6	B	1048	1055	Right-handed alpha
Helix 43	AE7	B	1056	1058	Right-handed 310
Helix 44	AE8	B	1066	1072	Right-handed alpha
Helix 45	AE9	B	1075	1123	Right-handed alpha
Helix 46	AF1	B	1216	1218	Right-handed 310
Helix 47	AF2	B	1237	1241	Right-handed 310
Helix 48	AF3	B	1247	1254	Right-handed alpha
Helix 49	AF4	C	32	37	Right-handed alpha
Helix 50	AF5	C	233	241	Right-handed alpha
Helix 51	AF6	C	326	331	Right-handed alpha
Helix 52	AF7	C	466	475	Right-handed alpha
Helix 53	AF8	C	577	581	Right-handed 310
Helix 54	AF9	C	807	813	Right-handed alpha
Helix 55	AG1	C	816	824	Right-handed alpha
Helix 56	AG2	C	826	852	Right-handed alpha
Helix 57	AG3	C	855	860	Right-handed alpha
Helix 58	AG4	C	895	906	Right-handed alpha
Helix 59	AG5	C	928	936	Right-handed alpha
Helix 60	AG6	C	946	960	Right-handed alpha
Helix 61	AG7	C	961	963	Right-handed 310
Helix 62	AG8	C	973	986	Right-handed alpha
Helix 63	AG9	C	993	1014	Right-handed alpha
Helix 64	AH1	C	1016	1020	Right-handed 310
Helix 65	AH2	C	1030	1044	Right-handed alpha
Helix 66	AH3	C	1048	1055	Right-handed alpha
Helix 67	AH4	C	1056	1058	Right-handed 310
Helix 68	AH5	C	1066	1072	Right-handed alpha
Helix 69	AH6	C	1075	1123	Right-handed alpha
Helix 70	AH7	C	1216	1218	Right-handed 310
Helix 71	AH8	C	1237	1241	Right-handed 310
Helix 72	AH9	C	1247	1254	Right-handed alpha

There are 48 sheets in PDB entry 6VV5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	45	51	first strand
Strand 2	A	211	217	anti-parallel
Strand 3	A	226	229	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	180	184	first strand
Strand 2	A	172	176	anti-parallel
Strand 3	A	164	169	anti-parallel
Strand 4	A	79	82	anti-parallel
Strand 5	A	204	207	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	148	154	first strand
Strand 2	A	121	126	anti-parallel
Strand 3	A	106	111	anti-parallel
Strand 4	A	91	96	anti-parallel
Strand 5	A	191	193	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	270	286	first strand
Strand 2	A	438	454	anti-parallel
Strand 3	A	318	323	anti-parallel
Strand 4	A	397	401	anti-parallel
Strand 5	A	405	408	anti-parallel
Strand 6	A	414	415	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	270	286	first strand
Strand 2	A	438	454	anti-parallel
Strand 3	A	457	463	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	296	298	first strand
Strand 2	A	419	424	anti-parallel
Strand 3	A	335	339	anti-parallel
Strand 4	A	344	350	anti-parallel
Strand 5	A	372	379	anti-parallel
Strand 6	A	382	390	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	483	488	first strand
Strand 2	A	703	709	anti-parallel
Strand 3	A	712	718	anti-parallel
Strand 4	A	734	738	anti-parallel
Strand 5	A	727	731	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	499	502	first strand
Strand 2	A	649	654	parallel
Strand 3	A	657	665	anti-parallel
Strand 4	A	694	698	anti-parallel
Strand 5	A	683	687	anti-parallel
Strand 6	A	675	677	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	531	536	first strand
Strand 2	A	510	520	anti-parallel
Strand 3	A	548	558	parallel
Strand 4	A	613	630	parallel
Strand 5	A	583	591	anti-parallel
Strand 6	A	541	543	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	531	536	first strand
Strand 2	A	510	520	anti-parallel
Strand 3	A	548	558	parallel
Strand 4	A	613	630	parallel
Strand 5	A	599	606	anti-parallel
Strand 6	A	565	570	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	749	751	first strand
Strand 2	A	754	756	anti-parallel
Strand 3	A	762	764	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	780	786	first strand
Strand 2	A	1162	1168	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	789	798	first strand
Strand 2	A	1150	1159	anti-parallel
Strand 3	A	1138	1147	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	804	806	first strand
Strand 2	A	938	940	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1220	1223	first strand
Strand 2	A	1178	1182	anti-parallel
Strand 3	A	1172	1174	anti-parallel
Strand 4	A	1231	1233	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1187	1190	first strand
Strand 2	A	1203	1206	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	45	51	first strand
Strand 2	B	211	217	anti-parallel
Strand 3	B	226	229	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	180	184	first strand
Strand 2	B	172	176	anti-parallel
Strand 3	B	164	169	anti-parallel
Strand 4	B	79	82	anti-parallel
Strand 5	B	204	207	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	148	154	first strand
Strand 2	B	121	126	anti-parallel
Strand 3	B	106	111	anti-parallel
Strand 4	B	91	96	anti-parallel
Strand 5	B	191	193	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	270	286	first strand
Strand 2	B	438	454	anti-parallel
Strand 3	B	318	323	anti-parallel
Strand 4	B	397	401	anti-parallel
Strand 5	B	405	408	anti-parallel
Strand 6	B	414	415	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	270	286	first strand
Strand 2	B	438	454	anti-parallel
Strand 3	B	457	463	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	296	298	first strand
Strand 2	B	419	424	anti-parallel
Strand 3	B	335	339	anti-parallel
Strand 4	B	344	350	anti-parallel
Strand 5	B	372	379	anti-parallel
Strand 6	B	382	390	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	483	488	first strand
Strand 2	B	703	709	anti-parallel
Strand 3	B	712	718	anti-parallel
Strand 4	B	734	738	anti-parallel
Strand 5	B	727	731	anti-parallel

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There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	499	502	first strand
Strand 2	B	649	654	parallel
Strand 3	B	657	665	anti-parallel
Strand 4	B	694	698	anti-parallel
Strand 5	B	683	687	anti-parallel
Strand 6	B	675	677	anti-parallel

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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	531	536	first strand
Strand 2	B	510	520	anti-parallel
Strand 3	B	548	558	parallel
Strand 4	B	613	630	parallel
Strand 5	B	583	591	anti-parallel
Strand 6	B	541	543	anti-parallel

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There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	531	536	first strand
Strand 2	B	510	520	anti-parallel
Strand 3	B	548	558	parallel
Strand 4	B	613	630	parallel
Strand 5	B	599	606	anti-parallel
Strand 6	B	565	570	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	749	751	first strand
Strand 2	B	754	756	anti-parallel
Strand 3	B	762	764	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	780	786	first strand
Strand 2	B	1162	1168	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	789	798	first strand
Strand 2	B	1150	1159	anti-parallel
Strand 3	B	1138	1147	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	804	806	first strand
Strand 2	B	938	940	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1220	1223	first strand
Strand 2	B	1178	1182	anti-parallel
Strand 3	B	1172	1174	anti-parallel
Strand 4	B	1231	1233	parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1187	1190	first strand
Strand 2	B	1203	1206	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	45	51	first strand
Strand 2	C	211	217	anti-parallel
Strand 3	C	226	229	anti-parallel

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There are 5 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	180	184	first strand
Strand 2	C	172	176	anti-parallel
Strand 3	C	164	169	anti-parallel
Strand 4	C	79	82	anti-parallel
Strand 5	C	204	207	anti-parallel

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There are 5 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	148	154	first strand
Strand 2	C	121	126	anti-parallel
Strand 3	C	106	111	anti-parallel
Strand 4	C	91	96	anti-parallel
Strand 5	C	191	193	anti-parallel

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There are 6 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	270	286	first strand
Strand 2	C	438	454	anti-parallel
Strand 3	C	318	323	anti-parallel
Strand 4	C	397	401	anti-parallel
Strand 5	C	405	408	anti-parallel
Strand 6	C	414	415	anti-parallel

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There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	270	286	first strand
Strand 2	C	438	454	anti-parallel
Strand 3	C	457	463	anti-parallel

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There are 6 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	296	298	first strand
Strand 2	C	419	424	anti-parallel
Strand 3	C	335	339	anti-parallel
Strand 4	C	344	350	anti-parallel
Strand 5	C	372	379	anti-parallel
Strand 6	C	382	390	anti-parallel

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There are 5 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	483	488	first strand
Strand 2	C	703	709	anti-parallel
Strand 3	C	712	718	anti-parallel
Strand 4	C	734	738	anti-parallel
Strand 5	C	727	731	anti-parallel

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There are 6 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	499	502	first strand
Strand 2	C	649	654	parallel
Strand 3	C	657	665	anti-parallel
Strand 4	C	694	698	anti-parallel
Strand 5	C	683	687	anti-parallel
Strand 6	C	675	677	anti-parallel

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There are 6 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	531	536	first strand
Strand 2	C	510	520	anti-parallel
Strand 3	C	548	558	parallel
Strand 4	C	613	630	parallel
Strand 5	C	583	591	anti-parallel
Strand 6	C	541	543	anti-parallel

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There are 6 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	531	536	first strand
Strand 2	C	510	520	anti-parallel
Strand 3	C	548	558	parallel
Strand 4	C	613	630	parallel
Strand 5	C	599	606	anti-parallel
Strand 6	C	565	570	anti-parallel

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There are 3 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	749	751	first strand
Strand 2	C	754	756	anti-parallel
Strand 3	C	762	764	anti-parallel

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There are 2 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	780	786	first strand
Strand 2	C	1162	1168	anti-parallel

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There are 3 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	789	798	first strand
Strand 2	C	1150	1159	anti-parallel
Strand 3	C	1138	1147	anti-parallel

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There are 2 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	804	806	first strand
Strand 2	C	938	940	anti-parallel

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There are 4 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1220	1223	first strand
Strand 2	C	1178	1182	anti-parallel
Strand 3	C	1172	1174	anti-parallel
Strand 4	C	1231	1233	parallel

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There are 2 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1187	1190	first strand
Strand 2	C	1203	1206	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6VV5

Analysis of interatomic Contacts of Structural Units in PDB entry:
6VV5