Analysis of interatomic Contacts of Structural Units in PDB entry:
6VVC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6VVC entry

There is 1 chain in PDB entry 6VVC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 9GLU 321
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 6VVC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 22Right-handed alpha
Helix 2
AA2
A
23 30Right-handed alpha
Helix 3
AA3
A
35 38Right-handed 310
Helix 4
AA4
A
121 142Right-handed alpha
Helix 5
AA5
A
144 148Right-handed 310
Helix 6
AA6
A
174 195Right-handed alpha
Helix 7
AA7
A
210 212Right-handed 310
Helix 8
AA8
A
238 250Right-handed alpha
Helix 9
AA9
A
250 260Right-handed alpha
Helix 10
AB1
A
272 283Right-handed alpha
Helix 11
AB2
A
291 301Right-handed alpha
Helix 12
AB3
A
307 320Right-handed alpha
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There are 4 sheets in PDB entry 6VVC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 33first strand
Strand 2
A
46 51anti-parallel
Strand 3
A
54 61anti-parallel
Strand 4
A
64 73anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
152 154first strand
Strand 2
A
162 164anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
197 198first strand
Strand 2
A
231 232anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
214 216first strand
Strand 2
A
221 223anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il