Analysis of interatomic Contacts of Structural Units in PDB entry:
6VVD

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6VVD entry

There are 3 chains in PDB entry 6VVD (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 24	THR 317
B	LYS 24	LEU 322
C	LYS 24	GLU 61

There are 32 helices in PDB entry 6VVD. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	24	29	Right-handed alpha
Helix 2	AA2	A	35	38	Right-handed 310
Helix 3	AA3	A	121	142	Right-handed alpha
Helix 4	AA4	A	144	148	Right-handed 310
Helix 5	AA5	A	178	195	Right-handed alpha
Helix 6	AA6	A	210	212	Right-handed 310
Helix 7	AA7	A	238	250	Right-handed alpha
Helix 8	AA8	A	250	260	Right-handed alpha
Helix 9	AA9	A	272	282	Right-handed alpha
Helix 10	AB1	A	291	301	Right-handed alpha
Helix 11	AB2	A	307	317	Right-handed alpha
Helix 12	AB3	B	25	30	Right-handed alpha
Helix 13	AB4	B	35	38	Right-handed 310
Helix 14	AB5	B	121	142	Right-handed alpha
Helix 15	AB6	B	144	148	Right-handed 310
Helix 16	AB7	B	178	195	Right-handed alpha
Helix 17	AB8	B	210	212	Right-handed 310
Helix 18	AB9	B	238	260	Right-handed alpha
Helix 19	AC1	B	272	282	Right-handed alpha
Helix 20	AC2	B	291	301	Right-handed alpha
Helix 21	AC3	B	307	320	Right-handed alpha
Helix 22	AC4	C	25	29	Right-handed alpha
Helix 23	AC5	C	35	38	Right-handed 310
Helix 24	AC6	C	121	142	Right-handed alpha
Helix 25	AC7	C	144	148	Right-handed 310
Helix 26	AC8	C	178	195	Right-handed alpha
Helix 27	AC9	C	210	212	Right-handed 310
Helix 28	AD1	C	238	250	Right-handed alpha
Helix 29	AD2	C	250	260	Right-handed alpha
Helix 30	AD3	C	272	281	Right-handed alpha
Helix 31	AD4	C	291	301	Right-handed alpha
Helix 32	AD5	C	307	319	Right-handed alpha

There are 10 sheets in PDB entry 6VVD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	32	33	first strand
Strand 2	A	46	50	anti-parallel
Strand 3	A	54	61	anti-parallel
Strand 4	A	64	73	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	94	97	first strand
Strand 2	A	104	108	anti-parallel
Strand 3	A	111	115	anti-parallel
Strand 4	A	162	166	anti-parallel
Strand 5	A	152	154	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	214	216	first strand
Strand 2	A	221	223	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	32	33	first strand
Strand 2	B	46	50	anti-parallel
Strand 3	B	54	60	anti-parallel
Strand 4	B	65	73	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	94	97	first strand
Strand 2	B	102	108	anti-parallel
Strand 3	B	111	116	anti-parallel
Strand 4	B	162	165	anti-parallel
Strand 5	B	152	154	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	214	216	first strand
Strand 2	B	221	223	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	32	33	first strand
Strand 2	C	46	51	anti-parallel
Strand 3	C	54	60	anti-parallel
Strand 4	C	65	73	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	94	97	first strand
Strand 2	C	104	108	anti-parallel
Strand 3	C	111	115	anti-parallel
Strand 4	C	162	165	anti-parallel
Strand 5	C	152	154	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	197	198	first strand
Strand 2	C	231	232	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	214	216	first strand
Strand 2	C	221	223	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6VVD

Analysis of interatomic Contacts of Structural Units in PDB entry:
6VVD