Analysis of interatomic Contacts of Structural Units in PDB entry:
6VVG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6VVG entry

There are 2 chains in PDB entry 6VVG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 3PHE 279
B
 PRO 3CYS 278
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 6VVG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 14Right-handed alpha
Helix 2
AA2
A
58 67Right-handed alpha
Helix 3
AA3
A
98 102Right-handed 310
Helix 4
AA4
A
114 134Right-handed alpha
Helix 5
AA5
A
143 145Right-handed 310
Helix 6
AA6
A
160 164Right-handed 310
Helix 7
AA7
A
176 180Right-handed 310
Helix 8
AA8
A
181 186Right-handed alpha
Helix 9
AA9
A
191 209Right-handed alpha
Helix 10
AB1
A
227 236Right-handed alpha
Helix 11
AB2
A
246 257Right-handed alpha
Helix 12
AB3
A
260 264Right-handed 310
Helix 13
AB4
A
267 273Right-handed alpha
Helix 14
AB5
A
274 278Right-handed 310
Helix 15
AB6
B
4 16Right-handed alpha
Helix 16
AB7
B
57 67Right-handed alpha
Helix 17
AB8
B
98 104Right-handed alpha
Helix 18
AB9
B
114 134Right-handed alpha
Helix 19
AC1
B
143 145Right-handed 310
Helix 20
AC2
B
160 164Right-handed 310
Helix 21
AC3
B
176 180Right-handed 310
Helix 22
AC4
B
181 186Right-handed alpha
Helix 23
AC5
B
191 209Right-handed alpha
Helix 24
AC6
B
219 226Right-handed alpha
Helix 25
AC7
B
227 237Right-handed alpha
Helix 26
AC8
B
246 257Right-handed alpha
Helix 27
AC9
B
260 264Right-handed 310
Helix 28
AD1
B
267 273Right-handed alpha
Helix 29
AD2
B
274 278Right-handed 310
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There are 5 sheets in PDB entry 6VVG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
17 22first strand
Strand 2
A
32 39anti-parallel
Strand 3
A
45 51anti-parallel
Strand 4
A
87 92anti-parallel
Strand 5
A
76 82anti-parallel
Strand 6
B
76 82anti-parallel
Strand 7
B
87 92anti-parallel
Strand 8
B
45 51anti-parallel
Strand 9
B
33 39anti-parallel
Strand 10
B
17 22anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
137 138first strand
Strand 2
A
165 166anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
147 148first strand
Strand 2
A
157 158anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
137 138first strand
Strand 2
B
165 166anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
147 150first strand
Strand 2
B
155 158anti-parallel
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