Analysis of interatomic Contacts of Structural Units in PDB entry:
6VVM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6VVM entry

There are 3 chains in PDB entry 6VVM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 1ARG 123
B
 PRO 1ARG 123
C
 PRO 1ARG 123
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 6VVM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 32Right-handed alpha
Helix 2
AA2
A
34 37Right-handed 310
Helix 3
AA3
A
46 48Right-handed 310
Helix 4
AA4
A
58 61Right-handed 310
Helix 5
AA5
A
73 93Right-handed alpha
Helix 6
AA6
A
95 98Right-handed 310
Helix 7
AA7
A
118 122Right-handed alpha
Helix 8
AA8
B
12 32Right-handed alpha
Helix 9
AA9
B
34 37Right-handed 310
Helix 10
AB1
B
46 48Right-handed 310
Helix 11
AB2
B
58 61Right-handed 310
Helix 12
AB3
B
73 93Right-handed alpha
Helix 13
AB4
B
95 98Right-handed 310
Helix 14
AB5
C
12 32Right-handed alpha
Helix 15
AB6
C
34 37Right-handed 310
Helix 16
AB7
C
46 48Right-handed 310
Helix 17
AB8
C
58 61Right-handed 310
Helix 18
AB9
C
73 93Right-handed alpha
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There are 3 sheets in PDB entry 6VVM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
55 56first strand
Strand 2
B
50 52anti-parallel
Strand 3
A
100 106anti-parallel
Strand 4
A
63 69parallel
Strand 5
A
2 8anti-parallel
Strand 6
A
39 45parallel
Strand 7
C
111 113anti-parallel
Strand 8
C
116 117anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 56first strand
Strand 2
A
50 52anti-parallel
Strand 3
B
100 106anti-parallel
Strand 4
B
63 69parallel
Strand 5
B
2 8anti-parallel
Strand 6
B
39 45parallel
Strand 7
C
50 52anti-parallel
Strand 8
C
55 56anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
116 117first strand
Strand 2
A
111 113anti-parallel
Strand 3
C
39 45anti-parallel
Strand 4
C
2 8parallel
Strand 5
C
63 69anti-parallel
Strand 6
C
100 106parallel
Strand 7
B
111 113anti-parallel
Strand 8
B
116 117anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il