Analysis of interatomic Contacts of Structural Units in PDB entry:
6VVO

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6VVO entry

There are 6 chains in PDB entry 6VVO (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 580	TYR 1066
B	TYR 34	MET 349
C	ASN 19	THR 332
D	VAL 38	GLN 361
E	TRP 4	ASP 349
F	MET 1	MET 1

There are107 helices in PDB entry 6VVO. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	585	590	Right-handed alpha
Helix 2	AA2	A	606	617	Right-handed alpha
Helix 3	AA3	A	618	621	Right-handed 310
Helix 4	AA4	A	656	668	Right-handed alpha
Helix 5	AA5	A	682	690	Right-handed alpha
Helix 6	AA6	A	690	695	Right-handed alpha
Helix 7	AA7	A	698	702	Right-handed 310
Helix 8	AA8	A	721	725	Right-handed 310
Helix 9	AA9	A	732	743	Right-handed alpha
Helix 10	AB1	A	757	762	Right-handed alpha
Helix 11	AB2	A	763	767	Right-handed 310
Helix 12	AB3	A	776	792	Right-handed alpha
Helix 13	AB4	A	796	807	Right-handed alpha
Helix 14	AB5	A	810	827	Right-handed alpha
Helix 15	AB6	A	847	855	Right-handed alpha
Helix 16	AB7	A	866	876	Right-handed alpha
Helix 17	AB8	A	880	889	Right-handed alpha
Helix 18	AB9	A	890	892	Right-handed 310
Helix 19	AC1	A	900	928	Right-handed alpha
Helix 20	AC2	A	933	942	Right-handed alpha
Helix 21	AC3	A	943	949	Right-handed alpha
Helix 22	AC4	A	961	982	Right-handed alpha
Helix 23	AC5	A	992	1013	Right-handed alpha
Helix 24	AC6	A	1016	1028	Right-handed alpha
Helix 25	AC7	A	1031	1040	Right-handed alpha
Helix 26	AC8	A	1057	1066	Right-handed alpha
Helix 27	AC9	B	37	42	Right-handed alpha
Helix 28	AD1	B	46	50	Right-handed 310
Helix 29	AD2	B	53	67	Right-handed alpha
Helix 30	AD3	B	81	95	Right-handed alpha
Helix 31	AD4	B	97	101	Right-handed alpha
Helix 32	AD5	B	112	126	Right-handed alpha
Helix 33	AD6	B	142	146	Right-handed 310
Helix 34	AD7	B	147	161	Right-handed alpha
Helix 35	AD8	B	178	183	Right-handed alpha
Helix 36	AD9	B	194	210	Right-handed alpha
Helix 37	AE1	B	214	226	Right-handed alpha
Helix 38	AE2	B	228	243	Right-handed alpha
Helix 39	AE3	B	247	255	Right-handed alpha
Helix 40	AE4	B	259	272	Right-handed alpha
Helix 41	AE5	B	274	288	Right-handed alpha
Helix 42	AE6	B	291	305	Right-handed alpha
Helix 43	AE7	B	309	329	Right-handed alpha
Helix 44	AE8	B	333	348	Right-handed alpha
Helix 45	AE9	C	21	26	Right-handed alpha
Helix 46	AF1	C	37	50	Right-handed alpha
Helix 47	AF2	C	65	78	Right-handed alpha
Helix 48	AF3	C	99	103	Right-handed alpha
Helix 49	AF4	C	103	110	Right-handed alpha
Helix 50	AF5	C	131	145	Right-handed alpha
Helix 51	AF6	C	157	161	Right-handed 310
Helix 52	AF7	C	162	169	Right-handed alpha
Helix 53	AF8	C	178	193	Right-handed alpha
Helix 54	AF9	C	200	210	Right-handed alpha
Helix 55	AG1	C	212	227	Right-handed alpha
Helix 56	AG2	C	233	239	Right-handed alpha
Helix 57	AG3	C	243	256	Right-handed alpha
Helix 58	AG4	C	258	273	Right-handed alpha
Helix 59	AG5	C	276	291	Right-handed alpha
Helix 60	AG6	C	297	313	Right-handed alpha
Helix 61	AG7	C	317	330	Right-handed alpha
Helix 62	AG8	D	39	44	Right-handed alpha
Helix 63	AG9	D	60	64	Right-handed 310
Helix 64	AH1	D	83	96	Right-handed alpha
Helix 65	AH2	D	116	128	Right-handed alpha
Helix 66	AH3	D	156	170	Right-handed alpha
Helix 67	AH4	D	187	193	Right-handed alpha
Helix 68	AH5	D	203	218	Right-handed alpha
Helix 69	AH6	D	223	234	Right-handed alpha
Helix 70	AH7	D	237	248	Right-handed alpha
Helix 71	AH8	D	258	266	Right-handed alpha
Helix 72	AH9	D	270	283	Right-handed alpha
Helix 73	AI1	D	285	299	Right-handed alpha
Helix 74	AI2	D	302	316	Right-handed alpha
Helix 75	AI3	D	320	340	Right-handed alpha
Helix 76	AI4	D	343	360	Right-handed alpha
Helix 77	AI5	E	12	16	Right-handed 310
Helix 78	AI6	E	19	32	Right-handed alpha
Helix 79	AI7	E	47	60	Right-handed alpha
Helix 80	AI8	E	61	65	Right-handed 310
Helix 81	AI9	E	103	120	Right-handed alpha
Helix 82	AJ1	E	141	155	Right-handed alpha
Helix 83	AJ2	E	167	171	Right-handed 310
Helix 84	AJ3	E	172	177	Right-handed alpha
Helix 85	AJ4	E	188	204	Right-handed alpha
Helix 86	AJ5	E	210	220	Right-handed alpha
Helix 87	AJ6	E	222	233	Right-handed alpha
Helix 88	AJ7	E	249	265	Right-handed alpha
Helix 89	AJ8	E	267	284	Right-handed alpha
Helix 90	AJ9	E	287	301	Right-handed alpha
Helix 91	AK1	E	307	323	Right-handed alpha
Helix 92	AK2	E	327	349	Right-handed alpha
Helix 93	AK3	F	9	20	Right-handed alpha
Helix 94	AK4	F	72	80	Right-handed alpha
Helix 95	AK5	F	141	152	Right-handed alpha
Helix 96	AK6	F	209	216	Right-handed alpha
Helix 97	AK7	F	217	219	Right-handed 310
Helix 98	AK8	G	9	20	Right-handed alpha
Helix 99	AK9	G	72	80	Right-handed alpha
Helix 100	AL1	G	141	155	Right-handed alpha
Helix 101	AL2	G	209	216	Right-handed alpha
Helix 102	AL3	G	217	222	Right-handed 310
Helix 103	AL4	H	8	20	Right-handed alpha
Helix 104	AL5	H	71	80	Right-handed alpha
Helix 105	AL6	H	141	152	Right-handed alpha
Helix 106	AL7	H	209	216	Right-handed alpha
Helix 107	AL8	H	217	219	Right-handed 310

There are 11 sheets in PDB entry 6VVO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	671	675	first strand
Strand 2	A	715	719	parallel
Strand 3	A	748	751	parallel
Strand 4	A	646	650	parallel
Strand 5	A	768	771	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	102	105	first strand
Strand 2	B	136	140	parallel
Strand 3	B	165	171	parallel
Strand 4	B	72	75	parallel
Strand 5	B	186	189	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	87	91	first strand
Strand 2	C	120	125	parallel
Strand 3	C	149	155	parallel
Strand 4	C	56	59	parallel
Strand 5	C	170	173	parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	106	109	first strand
Strand 2	D	145	150	parallel
Strand 3	D	174	180	parallel
Strand 4	D	73	77	parallel
Strand 5	D	194	198	parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	68	75	first strand
Strand 2	E	81	88	anti-parallel
Strand 3	E	92	95	anti-parallel
Strand 4	E	130	135	parallel
Strand 5	E	159	164	parallel
Strand 6	E	38	41	parallel
Strand 7	E	180	183	parallel

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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	59	61	first strand
Strand 2	F	3	6	anti-parallel
Strand 3	F	87	90	anti-parallel
Strand 4	F	98	104	anti-parallel
Strand 5	F	112	117	anti-parallel
Strand 6	G	176	183	anti-parallel
Strand 7	G	166	173	anti-parallel
Strand 8	G	157	162	anti-parallel
Strand 9	G	203	208	anti-parallel

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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	66	71	first strand
Strand 2	F	25	31	anti-parallel
Strand 3	F	34	40	anti-parallel
Strand 4	F	47	53	anti-parallel
Strand 5	F	245	251	anti-parallel
Strand 6	F	235	239	anti-parallel
Strand 7	F	224	228	anti-parallel
Strand 8	F	135	140	anti-parallel
Strand 9	F	196	199	anti-parallel

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There are 9 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	203	208	first strand
Strand 2	F	157	163	anti-parallel
Strand 3	F	166	173	anti-parallel
Strand 4	F	176	182	anti-parallel
Strand 5	H	110	117	anti-parallel
Strand 6	H	98	103	anti-parallel
Strand 7	H	88	92	anti-parallel
Strand 8	H	2	6	anti-parallel
Strand 9	H	60	61	anti-parallel

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There are 9 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	59	61	first strand
Strand 2	G	2	6	anti-parallel
Strand 3	G	87	92	anti-parallel
Strand 4	G	98	104	anti-parallel
Strand 5	G	110	117	anti-parallel
Strand 6	H	176	182	anti-parallel
Strand 7	H	167	173	anti-parallel
Strand 8	H	157	162	anti-parallel
Strand 9	H	203	208	anti-parallel

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There are 9 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	67	71	first strand
Strand 2	G	25	31	anti-parallel
Strand 3	G	34	40	anti-parallel
Strand 4	G	46	53	anti-parallel
Strand 5	G	245	251	anti-parallel
Strand 6	G	235	240	anti-parallel
Strand 7	G	224	229	anti-parallel
Strand 8	G	135	140	anti-parallel
Strand 9	G	196	199	anti-parallel

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There are 9 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	66	68	first strand
Strand 2	H	28	30	anti-parallel
Strand 3	H	34	40	anti-parallel
Strand 4	H	46	53	anti-parallel
Strand 5	H	245	251	anti-parallel
Strand 6	H	235	241	anti-parallel
Strand 7	H	224	229	anti-parallel
Strand 8	H	135	140	anti-parallel
Strand 9	H	196	199	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6VVO

Analysis of interatomic Contacts of Structural Units in PDB entry:
6VVO