Analysis of interatomic Contacts of Structural Units in PDB entry:
6VVY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6VVY entry

There are 10 chains in PDB entry 6VVY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 2	ASN 226
B	MET 1	SER 237
C	ASN 30	SER 1140
D	GLY -1	ALA 1282
E	GLY 27	GLY 109
F	GLU 206	LEU 527
J	ASP 3	GLY 111
O	C 14	G 78
P	C 77	G 141
M	ILE 2	ALA 160

There are117 helices in PDB entry 6VVY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	30	43	Right-handed alpha
Helix 2	AA2	A	72	81	Right-handed alpha
Helix 3	AA3	A	108	110	Right-handed 310
Helix 4	AA4	A	203	226	Right-handed alpha
Helix 5	AA5	B	29	45	Right-handed alpha
Helix 6	AA6	B	72	81	Right-handed alpha
Helix 7	AA7	B	108	110	Right-handed 310
Helix 8	AA8	B	182	187	Right-handed alpha
Helix 9	AA9	B	203	224	Right-handed alpha
Helix 10	AB1	C	54	66	Right-handed alpha
Helix 11	AB2	C	67	77	Right-handed alpha
Helix 12	AB3	C	84	94	Right-handed alpha
Helix 13	AB4	C	118	126	Right-handed alpha
Helix 14	AB5	C	233	242	Right-handed alpha
Helix 15	AB6	C	244	252	Right-handed alpha
Helix 16	AB7	C	255	264	Right-handed alpha
Helix 17	AB8	C	269	282	Right-handed alpha
Helix 18	AB9	C	290	300	Right-handed alpha
Helix 19	AC1	C	309	321	Right-handed alpha
Helix 20	AC2	C	334	351	Right-handed alpha
Helix 21	AC3	C	380	407	Right-handed alpha
Helix 22	AC4	C	413	418	Right-handed alpha
Helix 23	AC5	C	420	432	Right-handed alpha
Helix 24	AC6	C	444	452	Right-handed alpha
Helix 25	AC7	C	532	539	Right-handed alpha
Helix 26	AC8	C	589	594	Right-handed 310
Helix 27	AC9	C	596	600	Right-handed 310
Helix 28	AD1	C	602	612	Right-handed alpha
Helix 29	AD2	C	631	637	Right-handed alpha
Helix 30	AD3	C	739	744	Right-handed alpha
Helix 31	AD4	C	815	826	Right-handed alpha
Helix 32	AD5	C	928	943	Right-handed alpha
Helix 33	AD6	C	981	991	Right-handed alpha
Helix 34	AD7	C	1036	1040	Right-handed 310
Helix 35	AD8	C	1069	1080	Right-handed alpha
Helix 36	AD9	C	1082	1091	Right-handed alpha
Helix 37	AE1	C	1098	1109	Right-handed alpha
Helix 38	AE2	C	1118	1131	Right-handed alpha
Helix 39	AE3	D	16	24	Right-handed alpha
Helix 40	AE4	D	48	53	Right-handed alpha
Helix 41	AE5	D	84	90	Right-handed 310
Helix 42	AE6	D	112	119	Right-handed alpha
Helix 43	AE7	D	121	130	Right-handed alpha
Helix 44	AE8	D	141	183	Right-handed alpha
Helix 45	AE9	D	195	228	Right-handed alpha
Helix 46	AF1	D	237	248	Right-handed alpha
Helix 47	AF2	D	257	267	Right-handed alpha
Helix 48	AF3	D	269	284	Right-handed alpha
Helix 49	AF4	D	286	305	Right-handed alpha
Helix 50	AF5	D	308	311	Right-handed 310
Helix 51	AF6	D	321	325	Right-handed 310
Helix 52	AF7	D	340	361	Right-handed alpha
Helix 53	AF8	D	363	383	Right-handed alpha
Helix 54	AF9	D	402	406	Right-handed 310
Helix 55	AG1	D	411	417	Right-handed alpha
Helix 56	AG2	D	445	452	Right-handed alpha
Helix 57	AG3	D	452	463	Right-handed alpha
Helix 58	AG4	D	468	479	Right-handed alpha
Helix 59	AG5	D	482	492	Right-handed alpha
Helix 60	AG6	D	505	507	Right-handed 310
Helix 61	AG7	D	528	533	Right-handed alpha
Helix 62	AG8	D	548	558	Right-handed alpha
Helix 63	AG9	D	560	564	Right-handed 310
Helix 64	AH1	D	578	590	Right-handed alpha
Helix 65	AH2	D	614	624	Right-handed alpha
Helix 66	AH3	D	643	651	Right-handed alpha
Helix 67	AH4	D	668	675	Right-handed alpha
Helix 68	AH5	D	689	704	Right-handed alpha
Helix 69	AH6	D	705	726	Right-handed alpha
Helix 70	AH7	D	741	762	Right-handed alpha
Helix 71	AH8	D	766	793	Right-handed alpha
Helix 72	AH9	D	797	805	Right-handed alpha
Helix 73	AI1	D	810	818	Right-handed alpha
Helix 74	AI2	D	845	881	Right-handed alpha
Helix 75	AI3	D	882	884	Right-handed 310
Helix 76	AI4	D	945	956	Right-handed alpha
Helix 77	AI5	D	975	980	Right-handed alpha
Helix 78	AI6	D	994	1005	Right-handed alpha
Helix 79	AI7	D	1006	1010	Right-handed 310
Helix 80	AI8	D	1027	1036	Right-handed alpha
Helix 81	AI9	D	1117	1143	Right-handed alpha
Helix 82	AJ1	D	1151	1162	Right-handed alpha
Helix 83	AJ2	D	1182	1195	Right-handed alpha
Helix 84	AJ3	D	1209	1216	Right-handed alpha
Helix 85	AJ4	D	1219	1225	Right-handed alpha
Helix 86	AJ5	D	1228	1237	Right-handed alpha
Helix 87	AJ6	D	1249	1255	Right-handed alpha
Helix 88	AJ7	D	1264	1269	Right-handed alpha
Helix 89	AJ8	D	1275	1281	Right-handed alpha
Helix 90	AJ9	E	33	37	Right-handed 310
Helix 91	AK1	E	39	44	Right-handed alpha
Helix 92	AK2	E	49	70	Right-handed alpha
Helix 93	AK3	E	90	101	Right-handed alpha
Helix 94	AK4	F	210	221	Right-handed alpha
Helix 95	AK5	F	226	236	Right-handed alpha
Helix 96	AK6	F	242	268	Right-handed alpha
Helix 97	AK7	F	274	308	Right-handed alpha
Helix 98	AK8	F	316	335	Right-handed alpha
Helix 99	AK9	F	342	363	Right-handed alpha
Helix 100	AL1	F	369	391	Right-handed alpha
Helix 101	AL2	F	395	403	Right-handed alpha
Helix 102	AL3	F	406	417	Right-handed alpha
Helix 103	AL4	F	434	438	Right-handed 310
Helix 104	AL5	F	448	466	Right-handed alpha
Helix 105	AL6	F	468	480	Right-handed alpha
Helix 106	AL7	F	488	497	Right-handed alpha
Helix 107	AL8	F	499	515	Right-handed alpha
Helix 108	AL9	F	516	520	Right-handed 310
Helix 109	AM1	F	523	527	Right-handed 310
Helix 110	AM2	J	80	87	Right-handed alpha
Helix 111	AM3	J	90	110	Right-handed alpha
Helix 112	AM4	M	52	57	Right-handed alpha
Helix 113	AM5	M	63	75	Right-handed alpha
Helix 114	AM6	M	84	98	Right-handed alpha
Helix 115	AM7	M	100	118	Right-handed alpha
Helix 116	AM8	M	121	143	Right-handed alpha
Helix 117	AM9	M	146	160	Right-handed alpha

There are 41 sheets in PDB entry 6VVY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	8	13	first strand
Strand 2	A	18	26	anti-parallel
Strand 3	A	190	198	anti-parallel
Strand 4	A	171	178	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	93	100	first strand
Strand 2	A	133	143	anti-parallel
Strand 3	A	48	56	anti-parallel
Strand 4	A	162	163	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	85	86	first strand
Strand 2	A	117	118	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	103	106	first strand
Strand 2	A	124	128	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	145	147	first strand
Strand 2	A	166	168	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	8	15	first strand
Strand 2	B	18	26	anti-parallel
Strand 3	B	190	198	anti-parallel
Strand 4	B	171	177	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	93	100	first strand
Strand 2	B	133	144	anti-parallel
Strand 3	B	47	56	anti-parallel
Strand 4	B	162	163	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	85	87	first strand
Strand 2	B	116	118	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	103	106	first strand
Strand 2	B	124	128	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	147	first strand
Strand 2	B	166	167	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	39	40	first strand
Strand 2	C	972	973	parallel
Strand 3	C	626	627	parallel

Back to list of sheets
Back to top of page

There are 9 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	96	97	first strand
Strand 2	C	103	112	anti-parallel
Strand 3	C	130	141	anti-parallel
Strand 4	C	147	158	anti-parallel
Strand 5	M	45	49	anti-parallel
Strand 6	M	34	39	anti-parallel
Strand 7	M	16	21	anti-parallel
Strand 8	M	8	10	anti-parallel
Strand 9	M	59	60	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	166	168	first strand
Strand 2	C	171	175	anti-parallel
Strand 3	C	437	439	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	376	379	first strand
Strand 2	C	177	181	anti-parallel
Strand 3	C	454	456	parallel
Strand 4	C	497	499	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	184	185	first strand
Strand 2	C	204	205	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	188	191	first strand
Strand 2	C	198	201	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	354	355	first strand
Strand 2	C	363	364	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	505	506	first strand
Strand 2	C	512	520	anti-parallel
Strand 3	C	523	531	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	505	506	first strand
Strand 2	C	512	520	anti-parallel
Strand 3	C	578	579	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	541	542	first strand
Strand 2	C	558	562	anti-parallel
Strand 3	C	568	572	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	642	643	first strand
Strand 2	C	701	703	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	667	671	first strand
Strand 2	C	657	662	anti-parallel
Strand 3	C	648	652	anti-parallel
Strand 4	C	695	696	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	708	709	first strand
Strand 2	C	712	713	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1007	1008	first strand
Strand 2	C	1023	1032	anti-parallel
Strand 3	C	884	886	anti-parallel
Strand 4	C	892	898	anti-parallel
Strand 5	C	734	737	parallel
Strand 6	C	915	916	anti-parallel
Strand 7	C	717	722	parallel
Strand 8	C	1023	1032	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	749	760	first strand
Strand 2	C	865	877	anti-parallel
Strand 3	C	846	852	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	768	769	first strand
Strand 2	C	805	808	anti-parallel
Strand 3	C	832	834	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	801	803	first strand
Strand 2	C	837	838	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1042	1044	first strand
Strand 2	D	425	432	anti-parallel
Strand 3	D	540	544	anti-parallel
Strand 4	D	496	499	anti-parallel
Strand 5	D	509	517	anti-parallel
Strand 6	D	440	444	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1042	1044	first strand
Strand 2	D	425	432	anti-parallel
Strand 3	D	522	524	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1067	1068	first strand
Strand 2	D	420	421	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1133	1138	first strand
Strand 2	D	9	14	anti-parallel
Strand 3	D	1242	1243	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	93	102	first strand
Strand 2	D	313	319	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	233	235	first strand
Strand 2	D	134	139	anti-parallel
Strand 3	D	252	255	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	328	329	first strand
Strand 2	D	335	337	anti-parallel
Strand 3	F	421	422	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	633	637	first strand
Strand 2	D	662	666	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	897	899	first strand
Strand 2	D	960	963	anti-parallel
Strand 3	D	924	925	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1053	1056	first strand
Strand 2	D	1061	1066	anti-parallel
Strand 3	D	1075	1081	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1165	1167	first strand
Strand 2	D	1203	1205	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1271	1274	first strand
Strand 2	E	104	107	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	440	441	first strand
Strand 2	J	7	8	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	39	42	first strand
Strand 2	J	30	33	anti-parallel
Strand 3	J	61	64	anti-parallel
Strand 4	J	53	55	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6VVY

Analysis of interatomic Contacts of Structural Units in PDB entry:
6VVY