Analysis of interatomic Contacts of Structural Units in PDB entry:
6VVZ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6VVZ entry

There are 10 chains in PDB entry 6VVZ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 2	ASN 226
B	MET 1	SER 237
C	ASN 30	SER 1140
D	GLY -1	ALA 1282
E	GLY 27	GLY 109
F	SER 209	LEU 527
J	ARG 4	GLY 111
M	ILE 2	ALA 160
P	C 77	G 141
O	C 14	G 78

There are118 helices in PDB entry 6VVZ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	30	45	Right-handed alpha
Helix 2	AA2	A	72	81	Right-handed alpha
Helix 3	AA3	A	108	110	Right-handed 310
Helix 4	AA4	A	203	224	Right-handed alpha
Helix 5	AA5	B	29	45	Right-handed alpha
Helix 6	AA6	B	72	82	Right-handed alpha
Helix 7	AA7	B	108	110	Right-handed 310
Helix 8	AA8	B	203	224	Right-handed alpha
Helix 9	AA9	C	54	66	Right-handed alpha
Helix 10	AB1	C	67	77	Right-handed alpha
Helix 11	AB2	C	84	94	Right-handed alpha
Helix 12	AB3	C	118	126	Right-handed alpha
Helix 13	AB4	C	233	241	Right-handed alpha
Helix 14	AB5	C	244	250	Right-handed alpha
Helix 15	AB6	C	255	264	Right-handed alpha
Helix 16	AB7	C	269	282	Right-handed alpha
Helix 17	AB8	C	288	301	Right-handed alpha
Helix 18	AB9	C	309	320	Right-handed alpha
Helix 19	AC1	C	334	351	Right-handed alpha
Helix 20	AC2	C	380	407	Right-handed alpha
Helix 21	AC3	C	413	418	Right-handed alpha
Helix 22	AC4	C	420	432	Right-handed alpha
Helix 23	AC5	C	444	452	Right-handed alpha
Helix 24	AC6	C	532	538	Right-handed alpha
Helix 25	AC7	C	590	594	Right-handed 310
Helix 26	AC8	C	596	600	Right-handed 310
Helix 27	AC9	C	601	613	Right-handed alpha
Helix 28	AD1	C	630	638	Right-handed alpha
Helix 29	AD2	C	739	744	Right-handed alpha
Helix 30	AD3	C	779	783	Right-handed 310
Helix 31	AD4	C	815	826	Right-handed alpha
Helix 32	AD5	C	922	926	Right-handed 310
Helix 33	AD6	C	928	943	Right-handed alpha
Helix 34	AD7	C	953	957	Right-handed 310
Helix 35	AD8	C	981	991	Right-handed alpha
Helix 36	AD9	C	1036	1040	Right-handed 310
Helix 37	AE1	C	1069	1079	Right-handed alpha
Helix 38	AE2	C	1081	1090	Right-handed alpha
Helix 39	AE3	C	1095	1108	Right-handed alpha
Helix 40	AE4	C	1118	1131	Right-handed alpha
Helix 41	AE5	D	16	24	Right-handed alpha
Helix 42	AE6	D	85	90	Right-handed 310
Helix 43	AE7	D	104	107	Right-handed 310
Helix 44	AE8	D	112	118	Right-handed alpha
Helix 45	AE9	D	121	129	Right-handed alpha
Helix 46	AF1	D	140	186	Right-handed alpha
Helix 47	AF2	D	190	228	Right-handed alpha
Helix 48	AF3	D	238	247	Right-handed alpha
Helix 49	AF4	D	248	252	Right-handed 310
Helix 50	AF5	D	257	267	Right-handed alpha
Helix 51	AF6	D	269	284	Right-handed alpha
Helix 52	AF7	D	286	305	Right-handed alpha
Helix 53	AF8	D	308	311	Right-handed 310
Helix 54	AF9	D	321	325	Right-handed 310
Helix 55	AG1	D	340	361	Right-handed alpha
Helix 56	AG2	D	363	383	Right-handed alpha
Helix 57	AG3	D	393	397	Right-handed 310
Helix 58	AG4	D	402	406	Right-handed 310
Helix 59	AG5	D	411	419	Right-handed alpha
Helix 60	AG6	D	445	452	Right-handed alpha
Helix 61	AG7	D	452	463	Right-handed alpha
Helix 62	AG8	D	468	479	Right-handed alpha
Helix 63	AG9	D	482	492	Right-handed alpha
Helix 64	AH1	D	505	507	Right-handed 310
Helix 65	AH2	D	528	533	Right-handed alpha
Helix 66	AH3	D	548	558	Right-handed alpha
Helix 67	AH4	D	578	590	Right-handed alpha
Helix 68	AH5	D	614	624	Right-handed alpha
Helix 69	AH6	D	643	651	Right-handed alpha
Helix 70	AH7	D	668	675	Right-handed alpha
Helix 71	AH8	D	689	704	Right-handed alpha
Helix 72	AH9	D	705	727	Right-handed alpha
Helix 73	AI1	D	741	762	Right-handed alpha
Helix 74	AI2	D	766	793	Right-handed alpha
Helix 75	AI3	D	797	806	Right-handed alpha
Helix 76	AI4	D	810	818	Right-handed alpha
Helix 77	AI5	D	845	882	Right-handed alpha
Helix 78	AI6	D	913	917	Right-handed 310
Helix 79	AI7	D	945	956	Right-handed alpha
Helix 80	AI8	D	964	968	Right-handed 310
Helix 81	AI9	D	994	1005	Right-handed alpha
Helix 82	AJ1	D	1006	1009	Right-handed 310
Helix 83	AJ2	D	1027	1036	Right-handed alpha
Helix 84	AJ3	D	1117	1145	Right-handed alpha
Helix 85	AJ4	D	1150	1162	Right-handed alpha
Helix 86	AJ5	D	1183	1195	Right-handed alpha
Helix 87	AJ6	D	1209	1216	Right-handed alpha
Helix 88	AJ7	D	1219	1225	Right-handed alpha
Helix 89	AJ8	D	1228	1240	Right-handed alpha
Helix 90	AJ9	D	1247	1254	Right-handed alpha
Helix 91	AK1	D	1264	1269	Right-handed alpha
Helix 92	AK2	D	1275	1280	Right-handed alpha
Helix 93	AK3	E	33	37	Right-handed 310
Helix 94	AK4	E	39	44	Right-handed alpha
Helix 95	AK5	E	49	71	Right-handed alpha
Helix 96	AK6	E	90	101	Right-handed alpha
Helix 97	AK7	F	210	220	Right-handed alpha
Helix 98	AK8	F	226	236	Right-handed alpha
Helix 99	AK9	F	242	266	Right-handed alpha
Helix 100	AL1	F	274	308	Right-handed alpha
Helix 101	AL2	F	316	334	Right-handed alpha
Helix 102	AL3	F	342	362	Right-handed alpha
Helix 103	AL4	F	369	391	Right-handed alpha
Helix 104	AL5	F	395	403	Right-handed alpha
Helix 105	AL6	F	406	418	Right-handed alpha
Helix 106	AL7	F	448	466	Right-handed alpha
Helix 107	AL8	F	468	480	Right-handed alpha
Helix 108	AL9	F	488	497	Right-handed alpha
Helix 109	AM1	F	499	515	Right-handed alpha
Helix 110	AM2	F	516	525	Right-handed alpha
Helix 111	AM3	J	80	87	Right-handed alpha
Helix 112	AM4	J	90	110	Right-handed alpha
Helix 113	AM5	M	52	57	Right-handed alpha
Helix 114	AM6	M	63	74	Right-handed alpha
Helix 115	AM7	M	84	99	Right-handed alpha
Helix 116	AM8	M	100	118	Right-handed alpha
Helix 117	AM9	M	121	143	Right-handed alpha
Helix 118	AN1	M	146	156	Right-handed alpha

There are 47 sheets in PDB entry 6VVZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	8	9	first strand
Strand 2	A	18	26	anti-parallel
Strand 3	A	12	13	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	8	9	first strand
Strand 2	A	18	26	anti-parallel
Strand 3	A	190	198	anti-parallel
Strand 4	A	171	177	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	93	100	first strand
Strand 2	A	133	147	anti-parallel
Strand 3	A	47	56	anti-parallel
Strand 4	A	162	163	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	93	100	first strand
Strand 2	A	133	147	anti-parallel
Strand 3	A	166	168	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	85	86	first strand
Strand 2	A	117	118	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	103	106	first strand
Strand 2	A	124	128	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	12	first strand
Strand 2	B	20	26	anti-parallel
Strand 3	B	190	198	anti-parallel
Strand 4	B	171	177	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	93	100	first strand
Strand 2	B	133	144	anti-parallel
Strand 3	B	47	56	anti-parallel
Strand 4	B	161	163	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	103	106	first strand
Strand 2	B	124	128	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	147	first strand
Strand 2	B	166	167	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	39	40	first strand
Strand 2	C	972	973	parallel
Strand 3	C	626	627	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	96	97	first strand
Strand 2	C	103	106	anti-parallel
Strand 3	C	138	141	anti-parallel
Strand 4	C	147	148	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	110	112	first strand
Strand 2	C	132	135	anti-parallel
Strand 3	C	152	156	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	166	168	first strand
Strand 2	C	171	175	anti-parallel
Strand 3	C	437	439	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	376	379	first strand
Strand 2	C	177	181	anti-parallel
Strand 3	C	454	456	parallel
Strand 4	C	497	499	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	184	191	first strand
Strand 2	C	198	205	anti-parallel
Strand 3	C	212	213	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	215	216	first strand
Strand 2	C	222	223	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	354	355	first strand
Strand 2	C	363	364	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	505	506	first strand
Strand 2	C	512	520	anti-parallel
Strand 3	C	523	531	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	505	506	first strand
Strand 2	C	512	520	anti-parallel
Strand 3	C	578	579	anti-parallel
Strand 4	C	541	542	parallel
Strand 5	C	558	563	anti-parallel
Strand 6	C	567	572	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	642	644	first strand
Strand 2	C	700	704	anti-parallel
Strand 3	C	687	688	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	648	652	first strand
Strand 2	C	659	662	anti-parallel
Strand 3	C	667	668	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	708	709	first strand
Strand 2	C	712	713	anti-parallel

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There are 7 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	717	722	first strand
Strand 2	C	915	916	parallel
Strand 3	C	735	738	anti-parallel
Strand 4	C	893	899	parallel
Strand 5	C	884	886	anti-parallel
Strand 6	C	1027	1032	anti-parallel
Strand 7	C	717	722	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	751	760	first strand
Strand 2	C	865	875	anti-parallel
Strand 3	C	845	854	anti-parallel
Strand 4	C	795	796	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	768	769	first strand
Strand 2	C	805	808	anti-parallel
Strand 3	C	832	834	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	801	803	first strand
Strand 2	C	837	838	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	906	907	first strand
Strand 2	C	1010	1011	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	944	945	first strand
Strand 2	C	965	966	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1007	1008	first strand
Strand 2	C	1023	1024	anti-parallel

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There are 8 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1042	1044	first strand
Strand 2	D	425	432	anti-parallel
Strand 3	D	540	544	anti-parallel
Strand 4	D	496	500	anti-parallel
Strand 5	D	509	517	anti-parallel
Strand 6	D	440	444	parallel
Strand 7	D	522	524	anti-parallel
Strand 8	D	425	432	parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1066	1067	first strand
Strand 2	D	421	422	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	11	first strand
Strand 2	D	1242	1243	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	93	102	first strand
Strand 2	D	313	319	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	234	235	first strand
Strand 2	D	134	136	anti-parallel
Strand 3	D	254	255	anti-parallel

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There are 5 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	421	422	first strand
Strand 2	D	335	337	parallel
Strand 3	D	328	330	anti-parallel
Strand 4	J	7	9	anti-parallel
Strand 5	F	440	441	parallel

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There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	611	612	first strand
Strand 2	D	632	637	parallel
Strand 3	D	662	667	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	886	888	first strand
Strand 2	D	974	975	parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	898	899	first strand
Strand 2	D	960	961	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	929	930	first strand
Strand 2	D	936	938	anti-parallel

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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1075	1081	first strand
Strand 2	D	1061	1066	anti-parallel
Strand 3	D	1051	1054	anti-parallel
Strand 4	D	1104	1105	anti-parallel

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There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1085	1086	first strand
Strand 2	D	1112	1113	anti-parallel

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There are 3 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1179	1182	first strand
Strand 2	D	1164	1167	anti-parallel
Strand 3	D	1203	1205	anti-parallel

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There are 2 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1271	1274	first strand
Strand 2	E	104	107	anti-parallel

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There are 4 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	39	42	first strand
Strand 2	J	30	34	anti-parallel
Strand 3	J	61	64	anti-parallel
Strand 4	J	53	55	anti-parallel

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There are 5 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	45	49	first strand
Strand 2	M	34	39	anti-parallel
Strand 3	M	15	23	anti-parallel
Strand 4	M	8	11	anti-parallel
Strand 5	M	59	60	anti-parallel

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There are 2 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	26	27	first strand
Strand 2	M	30	31	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6VVZ

Analysis of interatomic Contacts of Structural Units in PDB entry:
6VVZ