Analysis of interatomic Contacts of Structural Units in PDB entry:
6VW8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6VW8 entry

There are 4 chains in PDB entry 6VW8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 11	GLU 161
B	ILE 2	SER 514
C	ALA 11	SER 162
D	MET 1	SER 514

There are 75 helices in PDB entry 6VW8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	12	24	Right-handed alpha
Helix 2	AA2	A	29	42	Right-handed alpha
Helix 3	AA3	A	47	57	Right-handed alpha
Helix 4	AA4	A	59	70	Right-handed alpha
Helix 5	AA5	A	88	94	Right-handed alpha
Helix 6	AA6	A	95	108	Right-handed alpha
Helix 7	AA7	A	148	161	Right-handed alpha
Helix 8	AA8	B	12	18	Right-handed alpha
Helix 9	AA9	B	19	34	Right-handed alpha
Helix 10	AB1	B	48	52	Right-handed 310
Helix 11	AB2	B	70	72	Right-handed 310
Helix 12	AB3	B	73	80	Right-handed alpha
Helix 13	AB4	B	81	85	Right-handed 310
Helix 14	AB5	B	98	103	Right-handed alpha
Helix 15	AB6	B	119	126	Right-handed alpha
Helix 16	AB7	B	129	137	Right-handed alpha
Helix 17	AB8	B	139	150	Right-handed alpha
Helix 18	AB9	B	161	172	Right-handed alpha
Helix 19	AC1	B	191	200	Right-handed alpha
Helix 20	AC2	B	200	216	Right-handed alpha
Helix 21	AC3	B	228	245	Right-handed alpha
Helix 22	AC4	B	251	255	Right-handed 310
Helix 23	AC5	B	269	273	Right-handed 310
Helix 24	AC6	B	274	283	Right-handed alpha
Helix 25	AC7	B	300	304	Right-handed 310
Helix 26	AC8	B	311	324	Right-handed alpha
Helix 27	AC9	B	324	330	Right-handed alpha
Helix 28	AD1	B	361	369	Right-handed alpha
Helix 29	AD2	B	393	397	Right-handed 310
Helix 30	AD3	B	402	410	Right-handed alpha
Helix 31	AD4	B	426	442	Right-handed alpha
Helix 32	AD5	B	446	451	Right-handed alpha
Helix 33	AD6	B	451	465	Right-handed alpha
Helix 34	AD7	B	468	486	Right-handed alpha
Helix 35	AD8	B	489	494	Right-handed alpha
Helix 36	AD9	B	495	506	Right-handed alpha
Helix 37	AE1	B	507	511	Right-handed 310
Helix 38	AE2	C	12	24	Right-handed alpha
Helix 39	AE3	C	29	42	Right-handed alpha
Helix 40	AE4	C	47	57	Right-handed alpha
Helix 41	AE5	C	59	70	Right-handed alpha
Helix 42	AE6	C	88	93	Right-handed alpha
Helix 43	AE7	C	95	108	Right-handed alpha
Helix 44	AE8	C	130	134	Right-handed 310
Helix 45	AE9	C	148	161	Right-handed alpha
Helix 46	AF1	D	12	18	Right-handed alpha
Helix 47	AF2	D	19	34	Right-handed alpha
Helix 48	AF3	D	48	52	Right-handed 310
Helix 49	AF4	D	70	72	Right-handed 310
Helix 50	AF5	D	73	80	Right-handed alpha
Helix 51	AF6	D	81	85	Right-handed 310
Helix 52	AF7	D	98	103	Right-handed alpha
Helix 53	AF8	D	119	125	Right-handed alpha
Helix 54	AF9	D	129	137	Right-handed alpha
Helix 55	AG1	D	139	151	Right-handed alpha
Helix 56	AG2	D	161	172	Right-handed alpha
Helix 57	AG3	D	191	200	Right-handed alpha
Helix 58	AG4	D	200	216	Right-handed alpha
Helix 59	AG5	D	228	245	Right-handed alpha
Helix 60	AG6	D	251	255	Right-handed 310
Helix 61	AG7	D	269	273	Right-handed 310
Helix 62	AG8	D	274	283	Right-handed alpha
Helix 63	AG9	D	300	304	Right-handed 310
Helix 64	AH1	D	311	324	Right-handed alpha
Helix 65	AH2	D	324	330	Right-handed alpha
Helix 66	AH3	D	361	369	Right-handed alpha
Helix 67	AH4	D	393	397	Right-handed 310
Helix 68	AH5	D	402	409	Right-handed alpha
Helix 69	AH6	D	426	442	Right-handed alpha
Helix 70	AH7	D	446	451	Right-handed alpha
Helix 71	AH8	D	451	465	Right-handed alpha
Helix 72	AH9	D	468	486	Right-handed alpha
Helix 73	AI1	D	489	495	Right-handed alpha
Helix 74	AI2	D	495	506	Right-handed alpha
Helix 75	AI3	D	507	511	Right-handed 310

There are 10 sheets in PDB entry 6VW8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	113	114	first strand
Strand 2	A	120	125	anti-parallel
Strand 3	A	81	86	parallel
Strand 4	A	137	139	anti-parallel
Strand 5	A	142	144	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	37	41	first strand
Strand 2	B	4	8	parallel
Strand 3	B	55	59	anti-parallel
Strand 4	B	62	66	anti-parallel
Strand 5	B	91	94	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	260	265	first strand
Strand 2	B	219	224	parallel
Strand 3	B	178	183	parallel
Strand 4	B	306	310	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	332	333	first strand
Strand 2	B	336	337	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	352	357	first strand
Strand 2	B	339	346	anti-parallel
Strand 3	B	417	422	parallel
Strand 4	B	379	384	anti-parallel
Strand 5	B	391	392	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	113	114	first strand
Strand 2	C	120	125	anti-parallel
Strand 3	C	81	86	parallel
Strand 4	C	137	139	anti-parallel
Strand 5	C	142	144	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	38	41	first strand
Strand 2	D	5	8	parallel
Strand 3	D	55	59	anti-parallel
Strand 4	D	62	66	anti-parallel
Strand 5	D	91	94	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	260	265	first strand
Strand 2	D	219	224	parallel
Strand 3	D	178	183	parallel
Strand 4	D	306	310	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	332	333	first strand
Strand 2	D	336	337	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	352	357	first strand
Strand 2	D	339	346	anti-parallel
Strand 3	D	417	422	parallel
Strand 4	D	379	384	anti-parallel
Strand 5	D	391	392	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6VW8

Analysis of interatomic Contacts of Structural Units in PDB entry:
6VW8