Analysis of interatomic Contacts of Structural Units in PDB entry:
6VW9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6VW9 entry

There are 2 chains in PDB entry 6VW9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 660ASP 892
B
 SER 996THR 1063
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 10 helices in PDB entry 6VW9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
680 695Right-handed alpha
Helix 2
AA2
A
712 733Right-handed alpha
Helix 3
AA3
A
745 747Right-handed 310
Helix 4
AA4
A
748 760Right-handed alpha
Helix 5
AA5
A
785 799Right-handed alpha
Helix 6
AA6
A
808 812Right-handed 310
Helix 7
AA7
A
833 845Right-handed alpha
Helix 8
AA8
A
864 880Right-handed alpha
Helix 9
AA9
B
997 1013Right-handed alpha
Helix 10
AB1
B
1030 1045Right-handed alpha
Back to top of page

There is 1 sheet (AA1) in PDB entry 6VW9.

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
737 744first strand
Strand 2
A
700 707parallel
Strand 3
A
666 670parallel
Strand 4
A
769 773parallel
Strand 5
A
802 807parallel
Strand 6
B
1051 1055anti-parallel
Strand 7
B
1017 1021parallel
Strand 8
A
820 827parallel
Strand 9
A
850 859parallel
Strand 10
A
884 889parallel
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il