Analysis of interatomic Contacts of Structural Units in PDB entry:
6VWA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6VWA entry

There is 1 chain in PDB entry 6VWA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 661GLY 1058
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 6VWA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
681 695Right-handed alpha
Helix 2
AA2
A
712 733Right-handed alpha
Helix 3
AA3
A
745 747Right-handed 310
Helix 4
AA4
A
748 760Right-handed alpha
Helix 5
AA5
A
779 781Right-handed 310
Helix 6
AA6
A
782 788Right-handed alpha
Helix 7
AA7
A
788 799Right-handed alpha
Helix 8
AA8
A
833 845Right-handed alpha
Helix 9
AA9
A
845 850Right-handed alpha
Helix 10
AB1
A
864 879Right-handed alpha
Helix 11
AB2
A
892 910Right-handed alpha
Helix 12
AB3
A
981 1013Right-handed alpha
Helix 13
AB4
A
1030 1045Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 6VWA.

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
737 744first strand
Strand 2
A
700 707parallel
Strand 3
A
666 671parallel
Strand 4
A
769 773parallel
Strand 5
A
802 807parallel
Strand 6
A
1051 1055anti-parallel
Strand 7
A
1017 1021parallel
Strand 8
A
822 826parallel
Strand 9
A
852 859parallel
Strand 10
A
883 889parallel
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