Analysis of interatomic Contacts of Structural Units in PDB entry:
6VWF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6VWF entry

There are 2 chains in PDB entry 6VWF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1PHE 494
B
 MET 1PHE 494
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 6VWF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
47 68Right-handed alpha
Helix 2
AA2
A
69 87Right-handed alpha
Helix 3
AA3
A
87 100Right-handed alpha
Helix 4
AA4
A
102 126Right-handed alpha
Helix 5
AA5
A
158 173Right-handed alpha
Helix 6
AA6
A
187 200Right-handed alpha
Helix 7
AA7
A
212 222Right-handed alpha
Helix 8
AA8
A
268 279Right-handed alpha
Helix 9
AA9
A
280 286Right-handed 310
Helix 10
AB1
A
301 313Right-handed alpha
Helix 11
AB2
A
332 349Right-handed alpha
Helix 12
AB3
A
364 368Right-handed 310
Helix 13
AB4
A
385 390Right-handed alpha
Helix 14
AB5
A
404 412Right-handed alpha
Helix 15
AB6
A
427 438Right-handed alpha
Helix 16
AB7
A
467 477Right-handed alpha
Helix 17
AB8
B
47 68Right-handed alpha
Helix 18
AB9
B
69 87Right-handed alpha
Helix 19
AC1
B
87 100Right-handed alpha
Helix 20
AC2
B
102 126Right-handed alpha
Helix 21
AC3
B
158 173Right-handed alpha
Helix 22
AC4
B
187 200Right-handed alpha
Helix 23
AC5
B
212 222Right-handed alpha
Helix 24
AC6
B
268 279Right-handed alpha
Helix 25
AC7
B
280 286Right-handed 310
Helix 26
AC8
B
301 313Right-handed alpha
Helix 27
AC9
B
332 349Right-handed alpha
Helix 28
AD1
B
364 368Right-handed 310
Helix 29
AD2
B
385 390Right-handed alpha
Helix 30
AD3
B
404 412Right-handed alpha
Helix 31
AD4
B
427 438Right-handed alpha
Helix 32
AD5
B
467 477Right-handed alpha
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There are 10 sheets in PDB entry 6VWF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
13 15first strand
Strand 2
A
18 20anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 32first strand
Strand 2
A
39 46anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
131 132first strand
Strand 2
A
139 146anti-parallel
Strand 3
A
478 485anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
206 208first strand
Strand 2
A
176 180parallel
Strand 3
A
149 153parallel
Strand 4
A
225 229parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
352 355first strand
Strand 2
A
376 379anti-parallel
Strand 3
A
396 402parallel
Strand 4
A
293 297parallel
Strand 5
A
260 263parallel
Strand 6
A
420 424parallel
Strand 7
A
442 445parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
13 15first strand
Strand 2
B
18 20anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
25 32first strand
Strand 2
B
39 46anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
131 132first strand
Strand 2
B
139 146anti-parallel
Strand 3
B
478 485anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
206 208first strand
Strand 2
B
176 180parallel
Strand 3
B
149 153parallel
Strand 4
B
225 229parallel
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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
352 355first strand
Strand 2
B
376 379anti-parallel
Strand 3
B
396 402parallel
Strand 4
B
293 297parallel
Strand 5
B
260 263parallel
Strand 6
B
420 424parallel
Strand 7
B
442 445parallel
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