Analysis of interatomic Contacts of Structural Units in PDB entry:
6VWG

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6VWG entry

There are 3 chains in PDB entry 6VWG (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 1	SER 457
B	PRO 299	PRO 705
I	SER 5	THR 62

There are 26 helices in PDB entry 6VWG. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	12	20	Right-handed 310
Helix 2	AA2	A	65	70	Right-handed alpha
Helix 3	AA3	A	126	131	Right-handed alpha
Helix 4	AA4	A	133	137	Right-handed 310
Helix 5	AA5	A	144	149	Right-handed alpha
Helix 6	AA6	A	186	190	Right-handed 310
Helix 7	AA7	A	195	199	Right-handed 310
Helix 8	AA8	A	214	216	Right-handed 310
Helix 9	AA9	A	248	255	Right-handed alpha
Helix 10	AB1	A	313	319	Right-handed alpha
Helix 11	AB2	A	339	348	Right-handed alpha
Helix 12	AB3	A	403	407	Right-handed 310
Helix 13	AB4	A	425	431	Right-handed alpha
Helix 14	AB5	A	431	437	Right-handed alpha
Helix 15	AB6	B	313	321	Right-handed 310
Helix 16	AB7	B	339	348	Right-handed alpha
Helix 17	AB8	B	425	428	Right-handed 310
Helix 18	AB9	B	429	436	Right-handed alpha
Helix 19	AC1	B	486	488	Right-handed 310
Helix 20	AC2	B	558	563	Right-handed 310
Helix 21	AC3	B	677	701	Right-handed alpha
Helix 22	AC4	I	10	22	Right-handed alpha
Helix 23	AC5	I	23	25	Right-handed 310
Helix 24	AC6	I	41	47	Right-handed alpha
Helix 25	AC7	I	52	57	Right-handed alpha
Helix 26	AC8	I	58	60	Right-handed 310

There are 13 sheets in PDB entry 6VWG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2	3	first strand
Strand 2	A	24	25	parallel
Strand 3	A	50	51	parallel
Strand 4	A	75	76	parallel
Strand 5	A	105	106	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	7	9	first strand
Strand 2	A	29	32	parallel
Strand 3	A	55	58	parallel
Strand 4	A	85	90	parallel
Strand 5	A	110	114	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	164	167	first strand
Strand 2	A	170	173	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	206	209	first strand
Strand 2	A	218	220	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	224	226	first strand
Strand 2	A	229	231	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	239	241	first strand
Strand 2	A	245	247	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	267	269	first strand
Strand 2	A	272	274	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	308	311	first strand
Strand 2	A	329	332	parallel
Strand 3	A	358	361	parallel
Strand 4	A	388	393	parallel
Strand 5	A	415	419	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	325	326	first strand
Strand 2	A	353	354	parallel
Strand 3	A	377	378	parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	308	311	first strand
Strand 2	B	329	332	parallel
Strand 3	B	358	361	parallel
Strand 4	B	388	393	parallel
Strand 5	B	415	419	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	325	326	first strand
Strand 2	B	353	354	parallel
Strand 3	B	377	378	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	465	470	first strand
Strand 2	B	475	479	anti-parallel
Strand 3	B	535	538	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	520	524	first strand
Strand 2	B	490	499	anti-parallel
Strand 3	B	546	555	anti-parallel
Strand 4	B	572	575	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6VWG

Analysis of interatomic Contacts of Structural Units in PDB entry:
6VWG