Analysis of interatomic Contacts of Structural Units in PDB entry:
6VWH

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6VWH entry

There are 2 chains in PDB entry 6VWH (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 577	GLU 799
B	GLU 1	GLU 799

There are 9 helices in PDB entry 6VWH. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	684	697	Right-handed alpha
Helix 2	AA2	A	779	784	Right-handed alpha
Helix 3	AA3	B	12	17	Right-handed alpha
Helix 4	AA4	B	18	22	Right-handed 310
Helix 5	AA5	B	126	131	Right-handed alpha
Helix 6	AA6	B	133	137	Right-handed 310
Helix 7	AA7	B	144	149	Right-handed alpha
Helix 8	AA8	B	249	255	Right-handed alpha
Helix 9	AA9	B	779	784	Right-handed alpha

There are 13 sheets in PDB entry 6VWH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	585	593	first strand
Strand 2	A	596	602	anti-parallel
Strand 3	A	757	761	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	747	752	first strand
Strand 2	A	614	620	anti-parallel
Strand 3	A	768	775	anti-parallel
Strand 4	A	788	794	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2	3	first strand
Strand 2	B	24	25	parallel
Strand 3	B	50	51	parallel
Strand 4	B	75	76	parallel
Strand 5	B	105	106	parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	7	10	first strand
Strand 2	B	29	32	parallel
Strand 3	B	55	58	parallel
Strand 4	B	85	90	parallel
Strand 5	B	110	114	parallel
Strand 6	B	138	140	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	164	165	first strand
Strand 2	B	172	173	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	175	177	first strand
Strand 2	B	180	181	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	194	195	first strand
Strand 2	B	199	200	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	205	209	first strand
Strand 2	B	218	221	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	224	226	first strand
Strand 2	B	229	231	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	245	248	first strand
Strand 2	B	238	241	anti-parallel
Strand 3	B	272	274	parallel
Strand 4	B	267	269	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	281	283	first strand
Strand 2	B	291	293	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	585	590	first strand
Strand 2	B	596	602	anti-parallel
Strand 3	B	757	761	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	747	751	first strand
Strand 2	B	613	620	anti-parallel
Strand 3	B	768	776	anti-parallel
Strand 4	B	788	794	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6VWH

Analysis of interatomic Contacts of Structural Units in PDB entry:
6VWH