Analysis of interatomic Contacts of Structural Units in PDB entry:
6VWI

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6VWI entry

There are 3 chains in PDB entry 6VWI (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 1	SER 457
B	PRO 299	PRO 705
I	SER 5	THR 62

There are 23 helices in PDB entry 6VWI. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	12	22	Right-handed 310
Helix 2	AA2	A	39	43	Right-handed 310
Helix 3	AA3	A	65	69	Right-handed 310
Helix 4	AA4	A	126	131	Right-handed alpha
Helix 5	AA5	A	133	137	Right-handed 310
Helix 6	AA6	A	144	148	Right-handed 310
Helix 7	AA7	A	186	190	Right-handed 310
Helix 8	AA8	A	214	216	Right-handed 310
Helix 9	AA9	A	248	253	Right-handed alpha
Helix 10	AB1	A	313	319	Right-handed alpha
Helix 11	AB2	A	340	349	Right-handed alpha
Helix 12	AB3	A	425	436	Right-handed alpha
Helix 13	AB4	B	313	318	Right-handed alpha
Helix 14	AB5	B	319	321	Right-handed 310
Helix 15	AB6	B	339	349	Right-handed alpha
Helix 16	AB7	B	425	436	Right-handed alpha
Helix 17	AB8	B	443	447	Right-handed 310
Helix 18	AB9	B	486	488	Right-handed 310
Helix 19	AC1	B	560	564	Right-handed 310
Helix 20	AC2	B	677	682	Right-handed alpha
Helix 21	AC3	B	683	701	Right-handed alpha
Helix 22	AC4	I	10	22	Right-handed alpha
Helix 23	AC5	I	41	47	Right-handed alpha

There are 18 sheets in PDB entry 6VWI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2	3	first strand
Strand 2	A	24	25	parallel
Strand 3	A	50	51	parallel
Strand 4	A	75	76	parallel
Strand 5	A	105	106	parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	7	9	first strand
Strand 2	A	29	32	parallel
Strand 3	A	55	58	parallel
Strand 4	A	85	90	parallel
Strand 5	A	110	114	parallel
Strand 6	A	138	140	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	164	165	first strand
Strand 2	A	172	173	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	175	177	first strand
Strand 2	A	180	181	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	194	195	first strand
Strand 2	A	199	200	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	205	209	first strand
Strand 2	A	218	221	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	224	226	first strand
Strand 2	A	229	231	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	239	241	first strand
Strand 2	A	245	247	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	267	269	first strand
Strand 2	A	272	274	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	282	283	first strand
Strand 2	A	291	292	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	301	302	first strand
Strand 2	A	325	326	parallel
Strand 3	A	353	354	parallel
Strand 4	A	377	378	parallel
Strand 5	A	410	411	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	308	311	first strand
Strand 2	A	329	332	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	358	361	first strand
Strand 2	A	390	393	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	301	311	first strand
Strand 2	B	325	332	parallel
Strand 3	B	353	354	parallel
Strand 4	B	377	378	parallel
Strand 5	B	410	411	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	301	311	first strand
Strand 2	B	325	332	parallel
Strand 3	B	358	361	parallel
Strand 4	B	388	393	parallel
Strand 5	B	415	419	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	461	463	first strand
Strand 2	B	567	569	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	465	470	first strand
Strand 2	B	474	479	anti-parallel
Strand 3	B	535	539	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	520	524	first strand
Strand 2	B	490	499	anti-parallel
Strand 3	B	546	555	anti-parallel
Strand 4	B	572	575	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6VWI

Analysis of interatomic Contacts of Structural Units in PDB entry:
6VWI