Analysis of interatomic Contacts of Structural Units in PDB entry:
6VWJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6VWJ entry

There are 2 chains in PDB entry 6VWJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 580	LYS 897
B	GLU 1	LYS 897

There are 13 helices in PDB entry 6VWJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	624	629	Right-handed alpha
Helix 2	AA2	A	686	700	Right-handed alpha
Helix 3	AA3	A	779	784	Right-handed alpha
Helix 4	AA4	A	852	859	Right-handed alpha
Helix 5	AA5	B	15	22	Right-handed 310
Helix 6	AA6	B	65	69	Right-handed 310
Helix 7	AA7	B	126	131	Right-handed alpha
Helix 8	AA8	B	133	137	Right-handed 310
Helix 9	AA9	B	144	149	Right-handed alpha
Helix 10	AB1	B	249	253	Right-handed alpha
Helix 11	AB2	B	625	630	Right-handed alpha
Helix 12	AB3	B	779	784	Right-handed alpha
Helix 13	AB4	B	852	859	Right-handed alpha

There are 18 sheets in PDB entry 6VWJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	585	593	first strand
Strand 2	A	596	602	anti-parallel
Strand 3	A	757	761	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	747	752	first strand
Strand 2	A	611	620	anti-parallel
Strand 3	A	768	777	anti-parallel
Strand 4	A	789	794	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	809	813	first strand
Strand 2	A	817	821	anti-parallel
Strand 3	A	860	863	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	846	851	first strand
Strand 2	A	832	840	anti-parallel
Strand 3	A	869	879	anti-parallel
Strand 4	A	882	886	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	846	851	first strand
Strand 2	A	832	840	anti-parallel
Strand 3	A	869	879	anti-parallel
Strand 4	A	890	894	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2	3	first strand
Strand 2	B	24	25	parallel
Strand 3	B	50	51	parallel
Strand 4	B	75	76	parallel
Strand 5	B	105	106	parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	7	10	first strand
Strand 2	B	29	32	parallel
Strand 3	B	55	58	parallel
Strand 4	B	85	90	parallel
Strand 5	B	110	114	parallel
Strand 6	B	138	140	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	164	165	first strand
Strand 2	B	172	173	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	175	177	first strand
Strand 2	B	180	181	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	205	209	first strand
Strand 2	B	218	221	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	224	226	first strand
Strand 2	B	229	231	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	245	248	first strand
Strand 2	B	238	241	anti-parallel
Strand 3	B	272	274	parallel
Strand 4	B	267	269	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	281	283	first strand
Strand 2	B	291	293	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	585	590	first strand
Strand 2	B	596	602	anti-parallel
Strand 3	B	757	761	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	747	751	first strand
Strand 2	B	611	620	anti-parallel
Strand 3	B	768	777	anti-parallel
Strand 4	B	789	794	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	809	813	first strand
Strand 2	B	817	821	anti-parallel
Strand 3	B	860	863	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	846	851	first strand
Strand 2	B	832	840	anti-parallel
Strand 3	B	869	879	anti-parallel
Strand 4	B	882	883	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	846	851	first strand
Strand 2	B	832	840	anti-parallel
Strand 3	B	869	879	anti-parallel
Strand 4	B	890	894	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6VWJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
6VWJ