Analysis of interatomic Contacts of Structural Units in PDB entry:
6VWK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6VWK entry

There are 13 chains in PDB entry 6VWK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
I
 ASN 3ALA 79
J
 ASN 3ALA 79
L
 ASN 3ALA 79
M
 ASN 3ALA 79
N
 ASN 3ALA 79
O
 ASN 3ALA 79
P
 ASN 3ALA 79
Q
 ASN 3ALA 79
R
 ASN 3ALA 79
S
 ASN 3ALA 79
X
 MET 1ALA 47
Y
 MET 1ALA 50
a
 GLU 4GLU 269
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 35 helices in PDB entry 6VWK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
I
3 42Right-handed alpha
Helix 2
AA2
I
45 77Right-handed alpha
Helix 3
AA3
J
4 42Right-handed alpha
Helix 4
AA4
J
45 77Right-handed alpha
Helix 5
AA5
L
4 42Right-handed alpha
Helix 6
AA6
L
45 77Right-handed alpha
Helix 7
AA7
M
4 42Right-handed alpha
Helix 8
AA8
M
45 77Right-handed alpha
Helix 9
AA9
N
4 42Right-handed alpha
Helix 10
AB1
N
45 77Right-handed alpha
Helix 11
AB2
O
4 42Right-handed alpha
Helix 12
AB3
O
45 77Right-handed alpha
Helix 13
AB4
P
4 42Right-handed alpha
Helix 14
AB5
P
45 77Right-handed alpha
Helix 15
AB6
Q
4 42Right-handed alpha
Helix 16
AB7
Q
45 77Right-handed alpha
Helix 17
AB8
R
4 42Right-handed alpha
Helix 18
AB9
R
45 77Right-handed alpha
Helix 19
AC1
S
4 42Right-handed alpha
Helix 20
AC2
S
45 61Right-handed alpha
Helix 21
AC3
S
61 77Right-handed alpha
Helix 22
AC4
X
5 25Right-handed alpha
Helix 23
AC5
X
25 46Right-handed alpha
Helix 24
AC6
Y
2 50Right-handed alpha
Helix 25
AC7
a
7 16Right-handed alpha
Helix 26
AC8
a
43 67Right-handed alpha
Helix 27
AC9
a
73 94Right-handed alpha
Helix 28
AD1
a
100 118Right-handed alpha
Helix 29
AD2
a
119 121Right-handed 310
Helix 30
AD3
a
124 133Right-handed alpha
Helix 31
AD4
a
146 169Right-handed alpha
Helix 32
AD5
a
172 180Right-handed alpha
Helix 33
AD6
a
185 187Right-handed 310
Helix 34
AD7
a
188 229Right-handed alpha
Helix 35
AD8
a
230 269Right-handed alpha
Back to top of page

There is 1 sheet (AA1) in PDB entry 6VWK.

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
a
20 22first strand
Strand 2
a
40 42anti-parallel
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il