Analysis of interatomic Contacts of Structural Units in PDB entry:
6VWO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6VWO entry

There is 1 chain in PDB entry 6VWO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 33PRO 421
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 17 helices in PDB entry 6VWO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
51 58Right-handed alpha
Helix 2
AA2
A
69 83Right-handed alpha
Helix 3
AA3
A
93 107Right-handed alpha
Helix 4
AA4
A
124 133Right-handed alpha
Helix 5
AA5
A
175 179Right-handed 310
Helix 6
AA6
A
180 186Right-handed alpha
Helix 7
AA7
A
195 198Right-handed 310
Helix 8
AA8
A
204 219Right-handed alpha
Helix 9
AA9
A
229 234Right-handed alpha
Helix 10
AB1
A
236 248Right-handed alpha
Helix 11
AB2
A
255 263Right-handed alpha
Helix 12
AB3
A
266 275Right-handed alpha
Helix 13
AB4
A
286 288Right-handed 310
Helix 14
AB5
A
299 301Right-handed 310
Helix 15
AB6
A
326 330Right-handed 310
Helix 16
AB7
A
355 377Right-handed alpha
Helix 17
AB8
A
393 410Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 6VWO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
137 138first strand
Strand 2
A
110 113parallel
Strand 3
A
36 39parallel
Strand 4
A
190 193parallel
Strand 5
A
223 226parallel
Strand 6
A
250 254parallel
Strand 7
A
280 284parallel
Strand 8
A
290 297anti-parallel
Strand 9
A
333 340anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
65 67first strand
Strand 2
A
162 167parallel
Strand 3
A
150 156anti-parallel
Strand 4
A
43 49parallel
Strand 5
A
86 91anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
115 117first strand
Strand 2
A
143 145parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il