Analysis of interatomic Contacts of Structural Units in PDB entry:
6VWP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6VWP entry

There are 8 chains in PDB entry 6VWP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	HIS 0	ARG 434
B	HIS 0	ARG 434
C	HIS 0	ARG 434
D	HIS 0	ARG 434
E	HIS 0	ARG 434
F	HIS 0	ARG 434
G	HIS 0	ARG 434
H	HIS 0	ARG 434

There are160 helices in PDB entry 6VWP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	19	24	Right-handed alpha
Helix 2	AA2	A	51	58	Right-handed alpha
Helix 3	AA3	A	69	83	Right-handed alpha
Helix 4	AA4	A	93	107	Right-handed alpha
Helix 5	AA5	A	124	133	Right-handed alpha
Helix 6	AA6	A	175	179	Right-handed 310
Helix 7	AA7	A	180	186	Right-handed alpha
Helix 8	AA8	A	195	197	Right-handed 310
Helix 9	AA9	A	204	219	Right-handed alpha
Helix 10	AB1	A	229	235	Right-handed alpha
Helix 11	AB2	A	236	247	Right-handed alpha
Helix 12	AB3	A	255	263	Right-handed alpha
Helix 13	AB4	A	266	275	Right-handed alpha
Helix 14	AB5	A	286	288	Right-handed 310
Helix 15	AB6	A	299	301	Right-handed 310
Helix 16	AB7	A	326	330	Right-handed 310
Helix 17	AB8	A	342	346	Right-handed 310
Helix 18	AB9	A	353	378	Right-handed alpha
Helix 19	AC1	A	393	410	Right-handed alpha
Helix 20	AC2	A	425	434	Right-handed alpha
Helix 21	AC3	B	19	24	Right-handed alpha
Helix 22	AC4	B	51	57	Right-handed alpha
Helix 23	AC5	B	69	83	Right-handed alpha
Helix 24	AC6	B	93	107	Right-handed alpha
Helix 25	AC7	B	124	133	Right-handed alpha
Helix 26	AC8	B	175	179	Right-handed 310
Helix 27	AC9	B	180	186	Right-handed alpha
Helix 28	AD1	B	195	198	Right-handed 310
Helix 29	AD2	B	204	219	Right-handed alpha
Helix 30	AD3	B	229	235	Right-handed alpha
Helix 31	AD4	B	236	247	Right-handed alpha
Helix 32	AD5	B	255	263	Right-handed alpha
Helix 33	AD6	B	266	275	Right-handed alpha
Helix 34	AD7	B	286	288	Right-handed 310
Helix 35	AD8	B	315	320	Right-handed 310
Helix 36	AD9	B	326	330	Right-handed 310
Helix 37	AE1	B	342	346	Right-handed 310
Helix 38	AE2	B	356	378	Right-handed alpha
Helix 39	AE3	B	381	385	Right-handed 310
Helix 40	AE4	B	393	410	Right-handed alpha
Helix 41	AE5	B	425	434	Right-handed alpha
Helix 42	AE6	C	19	24	Right-handed alpha
Helix 43	AE7	C	51	58	Right-handed alpha
Helix 44	AE8	C	69	83	Right-handed alpha
Helix 45	AE9	C	93	107	Right-handed alpha
Helix 46	AF1	C	124	133	Right-handed alpha
Helix 47	AF2	C	175	179	Right-handed 310
Helix 48	AF3	C	180	186	Right-handed alpha
Helix 49	AF4	C	195	197	Right-handed 310
Helix 50	AF5	C	204	219	Right-handed alpha
Helix 51	AF6	C	229	235	Right-handed alpha
Helix 52	AF7	C	236	247	Right-handed alpha
Helix 53	AF8	C	255	263	Right-handed alpha
Helix 54	AF9	C	266	275	Right-handed alpha
Helix 55	AG1	C	286	288	Right-handed 310
Helix 56	AG2	C	299	301	Right-handed 310
Helix 57	AG3	C	315	320	Right-handed 310
Helix 58	AG4	C	326	330	Right-handed 310
Helix 59	AG5	C	342	346	Right-handed 310
Helix 60	AG6	C	354	378	Right-handed alpha
Helix 61	AG7	C	393	410	Right-handed alpha
Helix 62	AG8	C	425	434	Right-handed alpha
Helix 63	AG9	D	19	24	Right-handed alpha
Helix 64	AH1	D	51	57	Right-handed alpha
Helix 65	AH2	D	69	83	Right-handed alpha
Helix 66	AH3	D	93	107	Right-handed alpha
Helix 67	AH4	D	124	133	Right-handed alpha
Helix 68	AH5	D	175	179	Right-handed 310
Helix 69	AH6	D	180	186	Right-handed alpha
Helix 70	AH7	D	195	197	Right-handed 310
Helix 71	AH8	D	204	220	Right-handed alpha
Helix 72	AH9	D	228	235	Right-handed alpha
Helix 73	AI1	D	236	247	Right-handed alpha
Helix 74	AI2	D	255	263	Right-handed alpha
Helix 75	AI3	D	266	275	Right-handed alpha
Helix 76	AI4	D	286	288	Right-handed 310
Helix 77	AI5	D	315	320	Right-handed 310
Helix 78	AI6	D	326	330	Right-handed 310
Helix 79	AI7	D	342	346	Right-handed 310
Helix 80	AI8	D	354	378	Right-handed alpha
Helix 81	AI9	D	381	385	Right-handed 310
Helix 82	AJ1	D	393	410	Right-handed alpha
Helix 83	AJ2	D	425	434	Right-handed alpha
Helix 84	AJ3	E	19	23	Right-handed 310
Helix 85	AJ4	E	51	57	Right-handed alpha
Helix 86	AJ5	E	69	83	Right-handed alpha
Helix 87	AJ6	E	93	107	Right-handed alpha
Helix 88	AJ7	E	124	133	Right-handed alpha
Helix 89	AJ8	E	175	179	Right-handed 310
Helix 90	AJ9	E	180	186	Right-handed alpha
Helix 91	AK1	E	195	197	Right-handed 310
Helix 92	AK2	E	204	219	Right-handed alpha
Helix 93	AK3	E	229	235	Right-handed alpha
Helix 94	AK4	E	236	247	Right-handed alpha
Helix 95	AK5	E	255	263	Right-handed alpha
Helix 96	AK6	E	266	275	Right-handed alpha
Helix 97	AK7	E	286	288	Right-handed 310
Helix 98	AK8	E	299	301	Right-handed 310
Helix 99	AK9	E	326	330	Right-handed 310
Helix 100	AL1	E	354	378	Right-handed alpha
Helix 101	AL2	E	381	385	Right-handed 310
Helix 102	AL3	E	393	410	Right-handed alpha
Helix 103	AL4	E	425	434	Right-handed alpha
Helix 104	AL5	F	51	58	Right-handed alpha
Helix 105	AL6	F	69	83	Right-handed alpha
Helix 106	AL7	F	93	107	Right-handed alpha
Helix 107	AL8	F	124	133	Right-handed alpha
Helix 108	AL9	F	175	179	Right-handed 310
Helix 109	AM1	F	180	186	Right-handed alpha
Helix 110	AM2	F	195	197	Right-handed 310
Helix 111	AM3	F	204	220	Right-handed alpha
Helix 112	AM4	F	228	235	Right-handed alpha
Helix 113	AM5	F	236	247	Right-handed alpha
Helix 114	AM6	F	255	263	Right-handed alpha
Helix 115	AM7	F	266	275	Right-handed alpha
Helix 116	AM8	F	286	288	Right-handed 310
Helix 117	AM9	F	315	320	Right-handed 310
Helix 118	AN1	F	326	330	Right-handed 310
Helix 119	AN2	F	342	346	Right-handed 310
Helix 120	AN3	F	356	378	Right-handed alpha
Helix 121	AN4	F	393	410	Right-handed alpha
Helix 122	AN5	F	425	434	Right-handed alpha
Helix 123	AN6	G	19	26	Right-handed alpha
Helix 124	AN7	G	51	57	Right-handed alpha
Helix 125	AN8	G	69	83	Right-handed alpha
Helix 126	AN9	G	93	107	Right-handed alpha
Helix 127	AO1	G	124	133	Right-handed alpha
Helix 128	AO2	G	175	179	Right-handed 310
Helix 129	AO3	G	180	186	Right-handed alpha
Helix 130	AO4	G	195	197	Right-handed 310
Helix 131	AO5	G	204	219	Right-handed alpha
Helix 132	AO6	G	229	235	Right-handed alpha
Helix 133	AO7	G	236	247	Right-handed alpha
Helix 134	AO8	G	255	263	Right-handed alpha
Helix 135	AO9	G	266	275	Right-handed alpha
Helix 136	AP1	G	286	288	Right-handed 310
Helix 137	AP2	G	354	378	Right-handed alpha
Helix 138	AP3	G	381	385	Right-handed 310
Helix 139	AP4	G	393	410	Right-handed alpha
Helix 140	AP5	G	425	434	Right-handed alpha
Helix 141	AP6	H	51	57	Right-handed alpha
Helix 142	AP7	H	69	83	Right-handed alpha
Helix 143	AP8	H	93	107	Right-handed alpha
Helix 144	AP9	H	124	133	Right-handed alpha
Helix 145	AQ1	H	175	179	Right-handed 310
Helix 146	AQ2	H	180	186	Right-handed alpha
Helix 147	AQ3	H	195	197	Right-handed 310
Helix 148	AQ4	H	204	219	Right-handed alpha
Helix 149	AQ5	H	229	235	Right-handed alpha
Helix 150	AQ6	H	236	247	Right-handed alpha
Helix 151	AQ7	H	255	263	Right-handed alpha
Helix 152	AQ8	H	266	275	Right-handed alpha
Helix 153	AQ9	H	286	288	Right-handed 310
Helix 154	AR1	H	315	320	Right-handed 310
Helix 155	AR2	H	326	330	Right-handed 310
Helix 156	AR3	H	342	346	Right-handed 310
Helix 157	AR4	H	354	378	Right-handed alpha
Helix 158	AR5	H	381	385	Right-handed 310
Helix 159	AR6	H	393	411	Right-handed alpha
Helix 160	AR7	H	425	434	Right-handed alpha

There are 24 sheets in PDB entry 6VWP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	137	138	first strand
Strand 2	A	110	113	parallel
Strand 3	A	35	39	parallel
Strand 4	A	187	193	parallel
Strand 5	A	223	226	parallel
Strand 6	A	250	254	parallel
Strand 7	A	280	284	parallel
Strand 8	A	290	297	anti-parallel
Strand 9	A	333	340	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	65	67	first strand
Strand 2	A	163	167	parallel
Strand 3	A	150	155	anti-parallel
Strand 4	A	43	48	parallel
Strand 5	A	86	92	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	115	117	first strand
Strand 2	A	143	145	parallel

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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	137	138	first strand
Strand 2	B	110	113	parallel
Strand 3	B	35	39	parallel
Strand 4	B	187	193	parallel
Strand 5	B	223	226	parallel
Strand 6	B	250	254	parallel
Strand 7	B	280	284	parallel
Strand 8	B	290	297	anti-parallel
Strand 9	B	333	340	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	65	67	first strand
Strand 2	B	162	167	parallel
Strand 3	B	150	156	anti-parallel
Strand 4	B	43	49	parallel
Strand 5	B	88	92	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	115	117	first strand
Strand 2	B	143	145	parallel

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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	137	138	first strand
Strand 2	C	110	113	parallel
Strand 3	C	35	39	parallel
Strand 4	C	187	193	parallel
Strand 5	C	223	226	parallel
Strand 6	C	250	254	parallel
Strand 7	C	280	284	parallel
Strand 8	C	290	297	anti-parallel
Strand 9	C	333	340	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	65	67	first strand
Strand 2	C	162	167	parallel
Strand 3	C	150	156	anti-parallel
Strand 4	C	43	49	parallel
Strand 5	C	86	92	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	115	117	first strand
Strand 2	C	143	145	parallel

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There are 9 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	137	138	first strand
Strand 2	D	110	113	parallel
Strand 3	D	36	39	parallel
Strand 4	D	190	193	parallel
Strand 5	D	223	226	parallel
Strand 6	D	250	254	parallel
Strand 7	D	280	284	parallel
Strand 8	D	290	297	anti-parallel
Strand 9	D	333	340	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	65	67	first strand
Strand 2	D	163	167	parallel
Strand 3	D	150	156	anti-parallel
Strand 4	D	43	49	parallel
Strand 5	D	86	92	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	115	117	first strand
Strand 2	D	143	145	parallel

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There are 9 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	137	138	first strand
Strand 2	E	110	113	parallel
Strand 3	E	36	39	parallel
Strand 4	E	190	193	parallel
Strand 5	E	223	226	parallel
Strand 6	E	250	254	parallel
Strand 7	E	280	284	parallel
Strand 8	E	290	297	anti-parallel
Strand 9	E	333	340	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	65	67	first strand
Strand 2	E	162	167	parallel
Strand 3	E	150	156	anti-parallel
Strand 4	E	43	49	parallel
Strand 5	E	86	92	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	115	117	first strand
Strand 2	E	143	145	parallel

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There are 9 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	137	138	first strand
Strand 2	F	110	113	parallel
Strand 3	F	35	39	parallel
Strand 4	F	187	193	parallel
Strand 5	F	223	226	parallel
Strand 6	F	250	254	parallel
Strand 7	F	280	284	parallel
Strand 8	F	290	297	anti-parallel
Strand 9	F	333	340	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	65	67	first strand
Strand 2	F	162	167	parallel
Strand 3	F	151	156	anti-parallel
Strand 4	F	43	49	parallel
Strand 5	F	86	92	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	115	117	first strand
Strand 2	F	143	145	parallel

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There are 9 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	137	138	first strand
Strand 2	G	110	113	parallel
Strand 3	G	35	39	parallel
Strand 4	G	187	193	parallel
Strand 5	G	223	226	parallel
Strand 6	G	250	254	parallel
Strand 7	G	280	284	parallel
Strand 8	G	290	297	anti-parallel
Strand 9	G	333	340	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	65	67	first strand
Strand 2	G	162	167	parallel
Strand 3	G	151	156	anti-parallel
Strand 4	G	43	49	parallel
Strand 5	G	86	92	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	115	117	first strand
Strand 2	G	143	145	parallel

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There are 9 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	137	138	first strand
Strand 2	H	110	113	parallel
Strand 3	H	36	39	parallel
Strand 4	H	190	193	parallel
Strand 5	H	223	226	parallel
Strand 6	H	250	254	parallel
Strand 7	H	280	284	parallel
Strand 8	H	290	297	anti-parallel
Strand 9	H	333	340	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	65	67	first strand
Strand 2	H	164	167	parallel
Strand 3	H	150	156	anti-parallel
Strand 4	H	43	49	parallel
Strand 5	H	86	92	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	115	117	first strand
Strand 2	H	143	145	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6VWP

Analysis of interatomic Contacts of Structural Units in PDB entry:
6VWP