Analysis of interatomic Contacts of Structural Units in PDB entry:
6VWS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6VWS entry

There are 6 chains in PDB entry 6VWS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 1GLY 220
B
 PRO 1GLY 220
C
 PRO 1GLY 220
D
 PRO 1GLY 220
M
 PRO 1GLY 220
N
 PRO 1GLY 220
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 63 helices in PDB entry 6VWS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 28Right-handed alpha
Helix 2
AA2
A
48 58Right-handed alpha
Helix 3
AA3
A
62 65Right-handed 310
Helix 4
AA4
A
66 84Right-handed alpha
Helix 5
AA5
A
100 106Right-handed alpha
Helix 6
AA6
A
110 116Right-handed alpha
Helix 7
AA7
A
125 145Right-handed alpha
Helix 8
AA8
A
160 167Right-handed alpha
Helix 9
AA9
A
167 175Right-handed alpha
Helix 10
AB1
A
178 186Right-handed alpha
Helix 11
AB2
A
195 203Right-handed alpha
Helix 12
AB3
B
16 28Right-handed alpha
Helix 13
AB4
B
48 58Right-handed alpha
Helix 14
AB5
B
62 78Right-handed alpha
Helix 15
AB6
B
78 84Right-handed alpha
Helix 16
AB7
B
100 106Right-handed alpha
Helix 17
AB8
B
110 116Right-handed alpha
Helix 18
AB9
B
125 145Right-handed alpha
Helix 19
AC1
B
160 175Right-handed alpha
Helix 20
AC2
B
178 186Right-handed alpha
Helix 21
AC3
B
195 206Right-handed alpha
Helix 22
AC4
B
210 218Right-handed alpha
Helix 23
AC5
C
16 28Right-handed alpha
Helix 24
AC6
C
36 41Right-handed alpha
Helix 25
AC7
C
48 57Right-handed alpha
Helix 26
AC8
C
62 84Right-handed alpha
Helix 27
AC9
C
100 106Right-handed alpha
Helix 28
AD1
C
110 116Right-handed alpha
Helix 29
AD2
C
125 146Right-handed alpha
Helix 30
AD3
C
160 175Right-handed alpha
Helix 31
AD4
C
178 188Right-handed alpha
Helix 32
AD5
C
195 206Right-handed alpha
Helix 33
AD6
C
210 217Right-handed alpha
Helix 34
AD7
D
16 28Right-handed alpha
Helix 35
AD8
D
48 57Right-handed alpha
Helix 36
AD9
D
62 84Right-handed alpha
Helix 37
AE1
D
100 106Right-handed alpha
Helix 38
AE2
D
110 116Right-handed alpha
Helix 39
AE3
D
125 145Right-handed alpha
Helix 40
AE4
D
160 175Right-handed alpha
Helix 41
AE5
D
178 186Right-handed alpha
Helix 42
AE6
D
195 206Right-handed alpha
Helix 43
AE7
D
210 218Right-handed alpha
Helix 44
AE8
M
16 28Right-handed alpha
Helix 45
AE9
M
48 56Right-handed alpha
Helix 46
AF1
M
62 84Right-handed alpha
Helix 47
AF2
M
100 106Right-handed alpha
Helix 48
AF3
M
110 116Right-handed alpha
Helix 49
AF4
M
125 145Right-handed alpha
Helix 50
AF5
M
160 175Right-handed alpha
Helix 51
AF6
M
178 186Right-handed alpha
Helix 52
AF7
M
195 206Right-handed alpha
Helix 53
AF8
M
210 218Right-handed alpha
Helix 54
AF9
N
16 28Right-handed alpha
Helix 55
AG1
N
48 56Right-handed alpha
Helix 56
AG2
N
65 84Right-handed alpha
Helix 57
AG3
N
100 106Right-handed alpha
Helix 58
AG4
N
110 116Right-handed alpha
Helix 59
AG5
N
125 145Right-handed alpha
Helix 60
AG6
N
160 175Right-handed alpha
Helix 61
AG7
N
178 186Right-handed alpha
Helix 62
AG8
N
195 206Right-handed alpha
Helix 63
AG9
N
210 218Right-handed alpha
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There are 6 sheets in PDB entry 6VWS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 4first strand
Strand 2
A
10 12anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 4first strand
Strand 2
B
10 12anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
2 4first strand
Strand 2
C
10 12anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
2 4first strand
Strand 2
D
10 12anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
2 4first strand
Strand 2
M
10 12anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
N
2 4first strand
Strand 2
N
10 12anti-parallel
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