Analysis of interatomic Contacts of Structural Units in PDB entry:
6VX1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6VX1 entry

There are 2 chains in PDB entry 6VX1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 5SER 629
B
 SER 4SER 629
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 65 helices in PDB entry 6VX1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 11Right-handed alpha
Helix 2
AA2
A
13 27Right-handed alpha
Helix 3
AA3
A
30 38Right-handed alpha
Helix 4
AA4
A
77 113Right-handed alpha
Helix 5
AA5
A
123 135Right-handed alpha
Helix 6
AA6
A
143 159Right-handed alpha
Helix 7
AA7
A
166 172Right-handed 310
Helix 8
AA8
A
173 184Right-handed alpha
Helix 9
AA9
A
189 201Right-handed alpha
Helix 10
AB1
A
208 225Right-handed alpha
Helix 11
AB2
A
226 240Right-handed alpha
Helix 12
AB3
A
250 254Right-handed 310
Helix 13
AB4
A
267 279Right-handed alpha
Helix 14
AB5
A
280 290Right-handed alpha
Helix 15
AB6
A
301 312Right-handed alpha
Helix 16
AB7
A
320 328Right-handed alpha
Helix 17
AB8
A
343 351Right-handed alpha
Helix 18
AB9
A
377 394Right-handed alpha
Helix 19
AC1
A
395 396Right-handed 310
Helix 20
AC2
A
397 401Right-handed 310
Helix 21
AC3
A
415 423Right-handed alpha
Helix 22
AC4
A
427 436Right-handed alpha
Helix 23
AC5
A
456 469Right-handed alpha
Helix 24
AC6
A
478 486Right-handed alpha
Helix 25
AC7
A
490 497Right-handed 310
Helix 26
AC8
A
498 509Right-handed alpha
Helix 27
AC9
A
521 537Right-handed alpha
Helix 28
AD1
A
539 543Right-handed 310
Helix 29
AD2
A
554 567Right-handed alpha
Helix 30
AD3
A
582 591Right-handed alpha
Helix 31
AD4
A
591 598Right-handed alpha
Helix 32
AD5
A
606 625Right-handed alpha
Helix 33
AD6
B
5 9Right-handed alpha
Helix 34
AD7
B
13 26Right-handed alpha
Helix 35
AD8
B
30 38Right-handed alpha
Helix 36
AD9
B
44 48Right-handed alpha
Helix 37
AE1
B
77 114Right-handed alpha
Helix 38
AE2
B
123 134Right-handed alpha
Helix 39
AE3
B
143 159Right-handed alpha
Helix 40
AE4
B
166 172Right-handed 310
Helix 41
AE5
B
173 184Right-handed alpha
Helix 42
AE6
B
189 201Right-handed alpha
Helix 43
AE7
B
208 225Right-handed alpha
Helix 44
AE8
B
226 240Right-handed alpha
Helix 45
AE9
B
250 254Right-handed 310
Helix 46
AF1
B
267 278Right-handed alpha
Helix 47
AF2
B
280 290Right-handed alpha
Helix 48
AF3
B
301 312Right-handed alpha
Helix 49
AF4
B
321 328Right-handed alpha
Helix 50
AF5
B
343 351Right-handed alpha
Helix 51
AF6
B
377 394Right-handed alpha
Helix 52
AF7
B
395 396Right-handed 310
Helix 53
AF8
B
397 401Right-handed 310
Helix 54
AF9
B
415 423Right-handed alpha
Helix 55
AG1
B
427 436Right-handed alpha
Helix 56
AG2
B
456 469Right-handed alpha
Helix 57
AG3
B
478 486Right-handed alpha
Helix 58
AG4
B
490 497Right-handed 310
Helix 59
AG5
B
498 509Right-handed alpha
Helix 60
AG6
B
521 537Right-handed alpha
Helix 61
AG7
B
539 543Right-handed 310
Helix 62
AG8
B
554 566Right-handed alpha
Helix 63
AG9
B
582 591Right-handed alpha
Helix 64
AH1
B
591 598Right-handed alpha
Helix 65
AH2
B
606 625Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 6VX1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 51first strand
Strand 2
A
59 60anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
245 249first strand
Strand 2
A
408 412anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
315 317first strand
Strand 2
A
295 300parallel
Strand 3
A
259 264parallel
Strand 4
A
333 336parallel
Strand 5
A
355 358parallel
Strand 6
A
369 370parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
513 517first strand
Strand 2
A
471 476parallel
Strand 3
A
441 445parallel
Strand 4
A
545 549parallel
Strand 5
A
571 573parallel
Strand 6
A
601 603parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
50 51first strand
Strand 2
B
59 60anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
245 249first strand
Strand 2
B
408 412anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
315 317first strand
Strand 2
B
295 300parallel
Strand 3
B
259 264parallel
Strand 4
B
333 336parallel
Strand 5
B
355 358parallel
Strand 6
B
369 370parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
513 517first strand
Strand 2
B
471 476parallel
Strand 3
B
441 445parallel
Strand 4
B
545 549parallel
Strand 5
B
571 573parallel
Strand 6
B
601 603parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il