Analysis of interatomic Contacts of Structural Units in PDB entry:
6VX4

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6VX4 entry

There are 9 chains in PDB entry 6VX4 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
K	ASP 1	ILE 106
C	GLU 24	LYS 137
H	GLU 1	SER 118
A	GLU 24	LYS 137
B	GLU 24	LYS 137
D	GLU 24	LYS 137
E	GLU 24	LYS 137
G	VAL 19	LYS 242
F	ASN 23	CYS 269

There are 28 helices in PDB entry 6VX4. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	81	96	Right-handed alpha
Helix 2	AA2	C	110	115	Right-handed alpha
Helix 3	AA3	H	28	32	Right-handed 310
Helix 4	AA4	H	64	68	Right-handed 310
Helix 5	AA5	H	87	91	Right-handed 310
Helix 6	AA6	A	78	80	Right-handed 310
Helix 7	AA7	A	81	96	Right-handed alpha
Helix 8	AA8	A	110	115	Right-handed alpha
Helix 9	AA9	B	78	80	Right-handed 310
Helix 10	AB1	B	81	96	Right-handed alpha
Helix 11	AB2	B	110	117	Right-handed alpha
Helix 12	AB3	D	81	96	Right-handed alpha
Helix 13	AB4	D	110	117	Right-handed alpha
Helix 14	AB5	E	78	80	Right-handed 310
Helix 15	AB6	E	81	96	Right-handed alpha
Helix 16	AB7	E	110	117	Right-handed alpha
Helix 17	AB8	G	29	37	Right-handed alpha
Helix 18	AB9	G	46	52	Right-handed alpha
Helix 19	AC1	G	71	84	Right-handed alpha
Helix 20	AC2	G	106	116	Right-handed alpha
Helix 21	AC3	G	121	132	Right-handed alpha
Helix 22	AC4	G	207	213	Right-handed 310
Helix 23	AC5	G	232	241	Right-handed alpha
Helix 24	AC6	F	42	47	Right-handed alpha
Helix 25	AC7	F	47	54	Right-handed alpha
Helix 26	AC8	F	168	181	Right-handed alpha
Helix 27	AC9	F	199	207	Right-handed alpha
Helix 28	AD1	F	243	245	Right-handed 310

There are 16 sheets in PDB entry 6VX4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	4	5	first strand
Strand 2	K	19	25	anti-parallel
Strand 3	K	70	75	anti-parallel
Strand 4	K	62	67	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	53	54	first strand
Strand 2	K	45	49	anti-parallel
Strand 3	K	33	38	anti-parallel
Strand 4	K	85	90	anti-parallel
Strand 5	K	97	98	anti-parallel

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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	32	46	first strand
Strand 2	C	99	104	anti-parallel
Strand 3	C	121	126	anti-parallel
Strand 4	C	67	72	parallel
Strand 5	C	51	59	anti-parallel
Strand 6	C	32	46	anti-parallel
Strand 7	E	122	126	anti-parallel
Strand 8	E	99	103	anti-parallel
Strand 9	E	33	46	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	121	126	first strand
Strand 2	A	32	46	anti-parallel
Strand 3	A	51	59	anti-parallel
Strand 4	A	67	72	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	32	46	first strand
Strand 2	A	99	103	anti-parallel
Strand 3	A	122	126	anti-parallel
Strand 4	B	32	46	anti-parallel
Strand 5	B	51	59	anti-parallel
Strand 6	B	67	72	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	32	46	first strand
Strand 2	B	99	103	anti-parallel
Strand 3	B	122	126	anti-parallel
Strand 4	D	32	46	anti-parallel
Strand 5	D	51	59	anti-parallel
Strand 6	D	67	72	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	32	46	first strand
Strand 2	D	99	103	anti-parallel
Strand 3	D	122	126	anti-parallel
Strand 4	E	33	46	anti-parallel
Strand 5	E	51	59	anti-parallel
Strand 6	E	67	72	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	6	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	78	83	anti-parallel
Strand 4	H	69	73	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	113	117	parallel
Strand 3	H	93	95	anti-parallel
Strand 4	H	33	39	anti-parallel
Strand 5	H	45	52	anti-parallel
Strand 6	H	57	60	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	113	117	parallel
Strand 3	H	93	95	anti-parallel
Strand 4	H	33	39	anti-parallel
Strand 5	H	97	99	anti-parallel
Strand 6	H	106	109	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	21	22	first strand
Strand 2	G	92	98	anti-parallel
Strand 3	G	145	153	anti-parallel
Strand 4	G	160	161	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	25	26	first strand
Strand 2	G	92	98	anti-parallel
Strand 3	G	145	153	anti-parallel
Strand 4	G	165	167	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	103	105	first strand
Strand 2	G	134	136	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	204	205	first strand
Strand 2	G	198	200	anti-parallel
Strand 3	G	230	231	anti-parallel

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There are 8 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	75	76	first strand
Strand 2	F	91	94	anti-parallel
Strand 3	F	107	110	anti-parallel
Strand 4	F	123	126	anti-parallel
Strand 5	F	61	65	anti-parallel
Strand 6	F	29	33	parallel
Strand 7	F	262	266	anti-parallel
Strand 8	F	247	251	anti-parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	84	85	first strand
Strand 2	F	132	136	parallel
Strand 3	F	146	151	anti-parallel
Strand 4	F	154	158	anti-parallel
Strand 5	F	189	195	parallel
Strand 6	F	233	238	anti-parallel
Strand 7	F	216	219	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6VX4

Analysis of interatomic Contacts of Structural Units in PDB entry:
6VX4