Analysis of interatomic Contacts of Structural Units in PDB entry:
6VXF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6VXF entry

There are 2 chains in PDB entry 6VXF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 ALA 35TYR 654
A
 ALA 35TYR 654
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 58 helices in PDB entry 6VXF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
87 94Right-handed alpha
Helix 2
AA2
B
98 102Right-handed 310
Helix 3
AA3
B
135 148Right-handed alpha
Helix 4
AA4
B
153 169Right-handed alpha
Helix 5
AA5
B
170 174Right-handed 310
Helix 6
AA6
B
188 199Right-handed alpha
Helix 7
AA7
B
217 232Right-handed alpha
Helix 8
AA8
B
233 235Right-handed 310
Helix 9
AA9
B
247 251Right-handed 310
Helix 10
AB1
B
272 278Right-handed alpha
Helix 11
AB2
B
289 299Right-handed alpha
Helix 12
AB3
B
329 338Right-handed alpha
Helix 13
AB4
B
339 354Right-handed alpha
Helix 14
AB5
B
372 391Right-handed alpha
Helix 15
AB6
B
395 415Right-handed alpha
Helix 16
AB7
B
422 435Right-handed alpha
Helix 17
AB8
B
436 445Right-handed 310
Helix 18
AB9
B
452 461Right-handed alpha
Helix 19
AC1
B
465 475Right-handed alpha
Helix 20
AC2
B
477 482Right-handed alpha
Helix 21
AC3
B
483 494Right-handed alpha
Helix 22
AC4
B
495 497Right-handed 310
Helix 23
AC5
B
504 528Right-handed alpha
Helix 24
AC6
B
532 546Right-handed alpha
Helix 25
AC7
B
557 561Right-handed 310
Helix 26
AC8
B
565 571Right-handed 310
Helix 27
AC9
B
572 586Right-handed alpha
Helix 28
AD1
B
610 618Right-handed alpha
Helix 29
AD2
B
623 650Right-handed alpha
Helix 30
AD3
A
87 94Right-handed alpha
Helix 31
AD4
A
98 102Right-handed 310
Helix 32
AD5
A
135 148Right-handed alpha
Helix 33
AD6
A
153 169Right-handed alpha
Helix 34
AD7
A
170 174Right-handed 310
Helix 35
AD8
A
188 199Right-handed alpha
Helix 36
AD9
A
217 232Right-handed alpha
Helix 37
AE1
A
233 235Right-handed 310
Helix 38
AE2
A
247 251Right-handed 310
Helix 39
AE3
A
272 278Right-handed alpha
Helix 40
AE4
A
289 299Right-handed alpha
Helix 41
AE5
A
329 338Right-handed alpha
Helix 42
AE6
A
339 354Right-handed alpha
Helix 43
AE7
A
372 391Right-handed alpha
Helix 44
AE8
A
395 415Right-handed alpha
Helix 45
AE9
A
422 435Right-handed alpha
Helix 46
AF1
A
436 445Right-handed 310
Helix 47
AF2
A
452 461Right-handed alpha
Helix 48
AF3
A
465 475Right-handed alpha
Helix 49
AF4
A
477 482Right-handed alpha
Helix 50
AF5
A
483 494Right-handed alpha
Helix 51
AF6
A
495 497Right-handed 310
Helix 52
AF7
A
504 528Right-handed alpha
Helix 53
AF8
A
532 546Right-handed alpha
Helix 54
AF9
A
557 561Right-handed 310
Helix 55
AG1
A
565 571Right-handed 310
Helix 56
AG2
A
572 586Right-handed alpha
Helix 57
AG3
A
610 618Right-handed alpha
Helix 58
AG4
A
623 650Right-handed alpha
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There are 4 sheets in PDB entry 6VXF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
68 71first strand
Strand 2
B
37 40anti-parallel
Strand 3
B
107 108anti-parallel
Strand 4
B
111 112anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
121 123first strand
Strand 2
B
206 208parallel
Strand 3
B
237 241parallel
Strand 4
B
75 79parallel
Strand 5
B
256 260parallel
Strand 6
B
263 268anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
68 71first strand
Strand 2
A
37 40anti-parallel
Strand 3
A
107 108anti-parallel
Strand 4
A
111 112anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
121 123first strand
Strand 2
A
206 208parallel
Strand 3
A
237 241parallel
Strand 4
A
75 79parallel
Strand 5
A
256 260parallel
Strand 6
A
263 268anti-parallel
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