Analysis of interatomic Contacts of Structural Units in PDB entry:
6VXH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6VXH entry

There are 2 chains in PDB entry 6VXH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 35TYR 654
B
 ALA 35TYR 654
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 56 helices in PDB entry 6VXH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
89 94Right-handed alpha
Helix 2
AA2
A
117 121Right-handed 310
Helix 3
AA3
A
135 148Right-handed alpha
Helix 4
AA4
A
156 166Right-handed alpha
Helix 5
AA5
A
191 199Right-handed alpha
Helix 6
AA6
A
221 232Right-handed alpha
Helix 7
AA7
A
233 235Right-handed 310
Helix 8
AA8
A
247 251Right-handed 310
Helix 9
AA9
A
289 294Right-handed alpha
Helix 10
AB1
A
329 334Right-handed alpha
Helix 11
AB2
A
335 338Right-handed 310
Helix 12
AB3
A
341 352Right-handed alpha
Helix 13
AB4
A
372 391Right-handed alpha
Helix 14
AB5
A
395 398Right-handed 310
Helix 15
AB6
A
399 413Right-handed alpha
Helix 16
AB7
A
422 440Right-handed alpha
Helix 17
AB8
A
441 448Right-handed 310
Helix 18
AB9
A
451 461Right-handed alpha
Helix 19
AC1
A
465 474Right-handed alpha
Helix 20
AC2
A
483 498Right-handed alpha
Helix 21
AC3
A
505 527Right-handed alpha
Helix 22
AC4
A
538 543Right-handed alpha
Helix 23
AC5
A
546 551Right-handed alpha
Helix 24
AC6
A
568 571Right-handed 310
Helix 25
AC7
A
572 584Right-handed alpha
Helix 26
AC8
A
612 617Right-handed alpha
Helix 27
AC9
A
622 650Right-handed alpha
Helix 28
AD1
B
89 94Right-handed alpha
Helix 29
AD2
B
117 121Right-handed 310
Helix 30
AD3
B
135 148Right-handed alpha
Helix 31
AD4
B
156 167Right-handed alpha
Helix 32
AD5
B
187 199Right-handed alpha
Helix 33
AD6
B
220 232Right-handed alpha
Helix 34
AD7
B
233 235Right-handed 310
Helix 35
AD8
B
247 252Right-handed alpha
Helix 36
AD9
B
276 280Right-handed 310
Helix 37
AE1
B
289 294Right-handed alpha
Helix 38
AE2
B
295 299Right-handed 310
Helix 39
AE3
B
329 334Right-handed alpha
Helix 40
AE4
B
335 338Right-handed 310
Helix 41
AE5
B
341 350Right-handed alpha
Helix 42
AE6
B
372 390Right-handed alpha
Helix 43
AE7
B
396 413Right-handed alpha
Helix 44
AE8
B
423 440Right-handed alpha
Helix 45
AE9
B
441 445Right-handed 310
Helix 46
AF1
B
448 450Right-handed 310
Helix 47
AF2
B
451 461Right-handed alpha
Helix 48
AF3
B
465 474Right-handed alpha
Helix 49
AF4
B
478 483Right-handed alpha
Helix 50
AF5
B
483 498Right-handed alpha
Helix 51
AF6
B
505 527Right-handed alpha
Helix 52
AF7
B
546 551Right-handed alpha
Helix 53
AF8
B
565 571Right-handed 310
Helix 54
AF9
B
572 584Right-handed alpha
Helix 55
AG1
B
610 618Right-handed alpha
Helix 56
AG2
B
622 650Right-handed alpha
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There are 5 sheets in PDB entry 6VXH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
70 71first strand
Strand 2
A
37 40anti-parallel
Strand 3
A
105 108anti-parallel
Strand 4
A
111 112anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 44first strand
Strand 2
A
64 67anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
74 75first strand
Strand 2
A
237 239parallel
Strand 3
A
206 208parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
70 71first strand
Strand 2
B
37 40anti-parallel
Strand 3
B
105 108anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
206 208first strand
Strand 2
B
237 239parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il