Analysis of interatomic Contacts of Structural Units in PDB entry:
6VXI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6VXI entry

There are 2 chains in PDB entry 6VXI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 35TYR 654
B
 ALA 35TYR 654
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 56 helices in PDB entry 6VXI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
85 94Right-handed alpha
Helix 2
AA2
A
114 118Right-handed 310
Helix 3
AA3
A
135 147Right-handed alpha
Helix 4
AA4
A
153 164Right-handed alpha
Helix 5
AA5
A
170 174Right-handed 310
Helix 6
AA6
A
187 199Right-handed alpha
Helix 7
AA7
A
217 219Right-handed 310
Helix 8
AA8
A
220 232Right-handed alpha
Helix 9
AA9
A
273 278Right-handed alpha
Helix 10
AB1
A
289 294Right-handed alpha
Helix 11
AB2
A
341 353Right-handed alpha
Helix 12
AB3
A
372 391Right-handed alpha
Helix 13
AB4
A
394 413Right-handed alpha
Helix 14
AB5
A
419 421Right-handed 310
Helix 15
AB6
A
422 441Right-handed alpha
Helix 16
AB7
A
442 446Right-handed 310
Helix 17
AB8
A
451 461Right-handed alpha
Helix 18
AB9
A
465 478Right-handed alpha
Helix 19
AC1
A
478 483Right-handed alpha
Helix 20
AC2
A
483 498Right-handed alpha
Helix 21
AC3
A
506 527Right-handed alpha
Helix 22
AC4
A
534 543Right-handed alpha
Helix 23
AC5
A
545 550Right-handed alpha
Helix 24
AC6
A
562 567Right-handed alpha
Helix 25
AC7
A
568 571Right-handed 310
Helix 26
AC8
A
572 584Right-handed alpha
Helix 27
AC9
A
609 618Right-handed alpha
Helix 28
AD1
A
623 650Right-handed alpha
Helix 29
AD2
B
85 94Right-handed alpha
Helix 30
AD3
B
114 118Right-handed 310
Helix 31
AD4
B
135 147Right-handed alpha
Helix 32
AD5
B
153 164Right-handed alpha
Helix 33
AD6
B
170 174Right-handed 310
Helix 34
AD7
B
187 199Right-handed alpha
Helix 35
AD8
B
217 219Right-handed 310
Helix 36
AD9
B
220 232Right-handed alpha
Helix 37
AE1
B
273 278Right-handed alpha
Helix 38
AE2
B
289 294Right-handed alpha
Helix 39
AE3
B
341 353Right-handed alpha
Helix 40
AE4
B
372 391Right-handed alpha
Helix 41
AE5
B
394 413Right-handed alpha
Helix 42
AE6
B
419 421Right-handed 310
Helix 43
AE7
B
422 441Right-handed alpha
Helix 44
AE8
B
442 446Right-handed 310
Helix 45
AE9
B
451 461Right-handed alpha
Helix 46
AF1
B
465 478Right-handed alpha
Helix 47
AF2
B
478 483Right-handed alpha
Helix 48
AF3
B
483 498Right-handed alpha
Helix 49
AF4
B
506 527Right-handed alpha
Helix 50
AF5
B
534 543Right-handed alpha
Helix 51
AF6
B
545 550Right-handed alpha
Helix 52
AF7
B
562 567Right-handed alpha
Helix 53
AF8
B
568 571Right-handed 310
Helix 54
AF9
B
572 584Right-handed alpha
Helix 55
AG1
B
609 618Right-handed alpha
Helix 56
AG2
B
623 650Right-handed alpha
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There are 4 sheets in PDB entry 6VXI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 70first strand
Strand 2
A
37 44anti-parallel
Strand 3
A
105 108anti-parallel
Strand 4
A
111 112anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
122 124first strand
Strand 2
A
206 210parallel
Strand 3
A
237 241parallel
Strand 4
A
75 79parallel
Strand 5
A
256 260parallel
Strand 6
A
263 268anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
64 70first strand
Strand 2
B
37 44anti-parallel
Strand 3
B
105 108anti-parallel
Strand 4
B
111 112anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
122 124first strand
Strand 2
B
206 210parallel
Strand 3
B
237 241parallel
Strand 4
B
75 79parallel
Strand 5
B
256 260parallel
Strand 6
B
263 268anti-parallel
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